_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-40
 Query name: gi|169403978|ref|NP_001108591.1| glutathione peroxidase 1 [Canis lupus familiaris]
 Query range: 1-205  (total 205)

 Target: /data/www-rg/seblastian_results/333817041/tempfiles/temptarget.fasta
 Chromosome: JAEUCK010003412.1:subseq_113454,100825_ Strand: +
 Positions:
 -Exon 1  49952        50209
 -Exon 2  50484        50840

 Redox box: no

Query   MCAAALAAAAVAAAPRSVYAFSARPLAGGEPMSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ <---Intron---
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   274bp    
Target  MCAAALAAAAVAAAPRSVYAFSARPLAGGEPMSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ              
        atgggcggggggggcctgtgttgcccggggcaacgtccgagccagaggtctgaagcgtacaagcccccgccgcggcgtctactgcc              
        tgccctcccctccccgctactccgctcggactgtgctggattttaatcctggcctgaacataataggtgcggttttgtcgaatgaa              
        gcctctcaccgggcgccgcccagtggccgatgcgtcggcgggccgtgggcacagcgcccggcggggccacgcgtgcccgccgcgtg              
                                                          *                                                 

Query   > ENAKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGAQAHPLFAFLRESLPAPSDDTTALMTDPKFITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRR
        > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target    ENAKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGAQAHPLFAFLRESLPAPSDDTTALMTDPKFITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRR
          gagaaggacatcatgccgggtgcatactgatggaggcgccctgtccgtccgcaggaagcaagcataattcgtcagggtatgatcggcgggcgcatacc
          aacaaaattactaatgcgggtacatcttaagatagcacacttcttgactcccgaacccttcacattcgcctggaatcgataatttgcagtctggaggg
          actgcagcgtccgctatccgcgcccgttggcggccgggccccccgggtgtcctccctgagcccgcccgcggcccctcgctggcagcattgtgcgtccc
                                                                                                            

Query   FPTIDIEPDIEALLSQGPSCA
        |||||||||||||||||||||
Target  FPTIDIEPDIEALLSQGPSCA
        tcaagagcgaggtctcgcatg
        tcctatacatacttcagcggc
        cacttcgtccacggcggcctc
                             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 47 ; UGA-SECIS: 509

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAEUCK010003412.1:subseq_113454,100825_ Strand = + Positions = 50888 - 50962
 Found by:  Infernal (score=30.03) Covels (score=22.4)
 Stem2 length = 10   Apical loop length = 12   Insertion in stem2 = 1, 0
 Free Energy = -22.44

         ..(((((((.......((((((((((.(((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ((((((((((......{[[{((((((.((((.........-----...))))))))))}]]}......-..))))))))))
 target  CGGGGGAUUUCAUCCAUGAUGGUGUUUCCUUGAAAUCUGC-----AUGGAGGAACGCCUGAUUUCCAG-GAAAGUCCCCUG
                         ****            ^^^                       ****