_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-31
 Query name: gi|168693663|ref|NP_001108229.1| selenoprotein S [Canis lupus familiaris]
 Query range: 1-190  (total 190)

 Target: /data/www-rg/seblastian_results/583759166/tempfiles/temptarget.fasta
 Chromosome: JAEUCK010000639.1:subseq_660957,102920_ Strand: -
 Positions:
 -Exon 1  55847        55922
 -Exon 2  54997        55131
 -Exon 3  52893        52999
 -Exon 4  49859        50027
 -Exon 5  47760        47842

 Redox box: no

Query   MERDGQQLSARPALETEGLRYLHVTV <---Intron---> GSLLATYGWYIVFSCILLYVVFQKLSTRLRALRQRQLDRAEAAVE <---Intron--
        ||||| |||||||||||||||||||| <   715bp    > ||||||||||||||||||||||||||||||||||||||||||||| <   1997bp  
Target  MERDGPQLSARPALETEGLRYLHVTV                GSLLATYGWYIVFSCILLYVVFQKLSTRLRALRQRQLDRAEAAVE             
        agcggccctgccgcgaggtctccgag                gtccgatgttagtatacctggtcactaccagtacaccgcgggggg             
        tagagcatccgcctacagtgatatc                tgcttccaggatttggtttatttaatccgtgctgagatagcacct              
        gggccgggcgggtggcgggccgccg                gccggcctcgccccccctccggtggtccgggcggggggcgtaacg              
                                                                                                            

Query   -> PDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQ <---Intron---> LEEQKRRQKIEMWDSMQEGKSYKGNARKHPEEDSPGPSTSSVLPKR
         > ||||||||||||||||||||||||||||||||||| <   2865bp   > |||||||||||||||||||||||||||| |||||||||||||||||
Target     PDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQ                LEEQKRRQKIEMWDSMQEGKSYKGNARKPPEEDSPGPSTSSVLPKR
           cggggaccggcgggctaacggtagcggacagacac                cggcaaacaagatgaacggaatagagaaccgggacgctattgccac
          acatttagaactcccgtataaatacataaaaaatga                taaaaggaatatgagtaagagaagacgaccaaagcgcccccttcag
          atttttaaggtaactcgagaaaataatagtgaaaag                tgaaagaggtaggtcgaagatcaataagtgaacttgtttaacggag
                                                                                                            

Query   KPDRKPLRGGG <---Intron---> YNPLSGEGGGACSWRPGRRGPSSGGUG
        ||||||||||| <   2016bp   > |||||||||||||||||||||||||||
Target  KPDRKPLRGGG                YNPLSGEGGGACSWRPGRRGPSSGGUG
        acgcacccggg                tacctggggggtttacgcagcttggtg
        acagactggg                gaactcgagggcgcggcggggcccgggg
        attagtggat                tccagttaatacccgatacacgattaac
                                                            * 
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 338 ; UGA-SECIS: 341

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAEUCK010000639.1:subseq_660957,102920_ Strand = - Positions = 47421 - 47342
 Found by:  Infernal (score=25.59) Covels (score=39.26)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -6.59

         ..(((((((.........(((((((((((((((.................)))))))))))))))........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(({((({(.........{[[{(({{(((((((.................)))))))}}))}]]}..--....)})))})).
 target  GUGACAGGUUGCGUUGAAUGAUGUCUUCCUUGUAAACGGUGAGCCCACCAGCGAGGAUUACUGAUGC--AGACAGUUGAUGG
                           ****           ^^^                         ****