_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-43
 Query name: gi|373251206|ref|NP_001243249.1| glutathione peroxidase 6 precursor [Canis lupus familiaris]
 Query range: 1-221  (total 221)

 Target: /data/www-rg/seblastian_results/910870967/tempfiles/temptarget.fasta
 Chromosome: JAEUCK010002264.1:subseq_154005,111909_ Strand: +
 Positions:
 -Exon 1  81851        81937
 -Exon 2  84914        85067
 -Exon 3  88463        88580
 -Exon 4  89074        89173
 -Exon 5  90354        90557

 Redox box: no

Query   MVPQLWASALLPLLLAGLAQPTQNTQKMK <---Intron---> VDCYNGVMGTIYEYGALTLNNEEYVQFKQYAGKHVLFVNVATYUGLTAQYPE <-
        |/| | |/|| ||||||/|/|   ||||| <   2976bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||| < 
Target  MLPHLRAAALFPLLLAGVARPNPTTQKMK                VDCYNGVMGTIYEYGALTLNNEEYVQFKQYAGKHVLFVNVATYUGLTAQYPE   
        acccccgggctccccggggccacaacaaa                ggttaggagaatgtggcacaaggtgctactggacgctgaggattgtagctcg   
        ttcatgcccttctttcgtcgcacccaata                tagaagttgctaaagctctaaaaatataaacgaattttatccaggtccaac    
        gcgccgtgtccggcgcccggccccgaggg                gtctcgggccctgtaccccctggctgcggcccgtcctctgcccacgatgtt    
                                                                                                *           

Query   --Intron---> LNALQEELKSFGVVVLGFPCNQFGKQEPGKNSEILSGLK <---Intron---> HVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFL
          3395bp   > ||||||||||||||||||||||||||||||||||||||| <   493bp    > ||||||||||||||||||||||||||||||||
Target               LNALQEELKSFGVVVLGFPCNQFGKQEPGKNSEILSGLK                HVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFL
                     cagccggcattggggtgtctactgacgcgaatgactgca                cgccgggtgcatcctgagggaggagcagtatc
                    atactaaatactgttttgtcgaatgaaacgaacattcgta                atgcgggttcatattaagatagaaaaattctt
                    agtaggggggtttatggctcccgtaaaaaagcagtttgc                gtgtattctccttgctgagtgtagaaggctccg
                                                                                                            

Query   K <---Intron---> NSCPPTSDLLGSSNQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWFHQAPVSTVKADILAYLKQLKTE
        | <   1180bp   > ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  K                NSCPPTSDLLGSSNQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWFHQAPVSTVKADILAYLKQLKTE
        a                attccatgctgttaccttgcaagcgactatgatcggcgggcgacttccgcgaagaggacgtcaccaag
        a                acgccccattgccaattgactataatggataatttgcagtcttggtaacctgctacattcataataca
        g                ccctactttgcaacgccggcgactcccgttggcgggctgctcgcgccgtccctcgaccgccgagcacg
                                                                                             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 516 ; UGA-SECIS: 960

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAEUCK010002264.1:subseq_154005,111909_ Strand = + Positions = 91074 - 91146
 Found by:  Infernal (score=28.36) Covels (score=24.02)
 Stem2 length = 9   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -24.16

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..(((((((---(...([[((((((({(((......--.........)))})))))))]]).....-..))))))))..
 target  GAGGGCAUC---UCCAUGAUGGUGGGUUCCCAAGCC--CCUACGGUCGGACCCUACCAGAGCCUUC-UUGGGUGCCUGU
                         ****           ^^                        ****