_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-77
 Query name: gi|169636441|ref|NP_001108607.1| glutathione peroxidase 2 [Canis lupus familiaris]
 Query range: 1-190  (total 190)

 Target: /data/www-rg/seblastian_results/470835164/tempfiles/temptarget.fasta
 Chromosome: JAEUCK010010914.1:subseq_78540,103189_ Strand: +
 Positions:
 -Exon 1  49991        50212
 -Exon 2  52854        53201

 Redox box: no

Query   MAYIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ <---Intron---> ENCQNEEILN
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   2641bp   > ||||||||||
Target  MAYIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ                ENCQNEEILN
        agtagatttgcagaacgggaggtaatcgaggcagaggtctgaaacgtaccagcctctcaccggcgtctactgcc                gatcaggaca
        tcatcactaatgctgtagaatatactgggctttaatcctggcccgatcataataggtcggttttgtcgaatgaa                aagaaaatta
        gtcacgcccccttccgtgggatctgcacgcggtgtgcgcacaccgcccgccggacctcgcggttcctccatatg                gctgtggcgc
                                               *                                                            

Query   SLKYVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPLSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  SLKYVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPLSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR
        acatgccgggtccatacgcatggagcagccgtgtcagacctctggcttcaagcataatacgcctgggtatgatcagcgggctcctacatcaaaagcgaac
        gtaatgcgggtacctcttaagatagaaaacttcataaatcacaaactcttcacatttggctggcatcgataatttgcagactggaggctcctatacatag
        tcgtcctgtacgcttctcagtggttgcgttccccggcgccccttccaccgctcgcctgccgctatgcgctggcctgagggccccccccccccctgtccgc
                                                                                                            

Query   LLKVAI
        ||||||
Target  LLKVAI
        ccagga
        ttatct
        ccatcc
              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 209 ; UGA-SECIS: 659

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAEUCK010010914.1:subseq_78540,103189_ Strand = + Positions = 53411 - 53474
 Found by:  Infernal (score=31.0) Covels (score=22.87)
 Stem2 length = 9   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -25.1

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---(...([[{(((((({(((......--.-----...)))}))))))}]])----...))))))))..
 target  GGCCUUCAC---AGAAUGAUGGCACCUUCCUAAAUG--G-----UAUGGGUGGUGUCUGAG----AAGUGUGAAGGGC
                         ****           ^^^                       ****