------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAEUCK010006363.1:subseq_881916,134337_ Strand = + Positions = 84991 - 85065
 Found by:  Infernal (score=34.11) Covels (score=23.89)
 Stem2 length = 11   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -21.54

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..((((({(---(...{[[{(((((((((((.....-.........)))))))))))}]]}......-..))})))))..
 target  CAGGCUGCC---UCCUUGACGCCUUAGCUCGGAACC-GCUGUGAGGUGAGCUGAGGCCGAUGUCCUC-CAGGCCAGCUGC
                         ****            ^^                       ****                   

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = JAEUCK010006363.1:subseq_881916,134337_ Strand = - Positions = 72060 - 71994
 Found by:  Infernal (score=12.04) Covels (score=4.09)
 Stem2 length = 8   Apical loop length = 14   Insertion in stem2 = 0, 1
 Free Energy = -10.64

         ..(((((((.......((((((((((((.....................)))))).))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccagg-cCuGAUGuuuuuucaugaccggc
         ..(((([((---((..([[{((((((((..............-------)))))).))}]])..--..))))]))))..
 target  CCAGUAAUU---GACAUGAUGUCAAGGGAGAGGAAUACAAUC-------CUCUUGUGCUGAAAA--CAUCAAGUACUAA
                         ****                                      ****                 

------- SECIS element -- id:3 -- grade:A ----
 Chromosome = JAEUCK010006363.1:subseq_881916,134337_ Strand = + Positions = 72893 - 72966
 Found by:  Infernal (score=10.48) Covels (score=18.17)
 Stem2 length = 10   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -5.83

         ..(((((((.........(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ...({{(((.........([[{(((((({((((.....-..-----..))))}))))))}]]).....-...)))}})...
 target  UCCCCUUAGUGAAUAUGAUGAUGGGUUUUAUAGAAUUG-UU-----UCUUAUUAGAUCCUGAAGUGCA-GUCCUGCAGCAU
                           ****           ^^                        ****