------- SECIS element -- id:1 -- grade:A ---- Chromosome = JAEUCK010006363.1:subseq_881916,134337_ Strand = + Positions = 84991 - 85065 Found by: Infernal (score=34.11) Covels (score=23.89) Stem2 length = 11 Apical loop length = 14 Insertion in stem2 = 0, 0 Free Energy = -21.54 ..(((((((.......(((((((((((((((...............)))))))))))))))..........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc ..((((({(---(...{[[{(((((((((((.....-.........)))))))))))}]]}......-..))}))))).. target CAGGCUGCC---UCCUUGACGCCUUAGCUCGGAACC-GCUGUGAGGUGAGCUGAGGCCGAUGUCCUC-CAGGCCAGCUGC **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = JAEUCK010006363.1:subseq_881916,134337_ Strand = - Positions = 72060 - 71994 Found by: Infernal (score=12.04) Covels (score=4.09) Stem2 length = 8 Apical loop length = 14 Insertion in stem2 = 0, 1 Free Energy = -10.64 ..(((((((.......((((((((((((.....................)))))).))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccagg-cCuGAUGuuuuuucaugaccggc ..(((([((---((..([[{((((((((..............-------)))))).))}]])..--..))))])))).. target CCAGUAAUU---GACAUGAUGUCAAGGGAGAGGAAUACAAUC-------CUCUUGUGCUGAAAA--CAUCAAGUACUAA **** **** ------- SECIS element -- id:3 -- grade:A ---- Chromosome = JAEUCK010006363.1:subseq_881916,134337_ Strand = + Positions = 72893 - 72966 Found by: Infernal (score=10.48) Covels (score=18.17) Stem2 length = 10 Apical loop length = 9 Insertion in stem2 = 0, 0 Free Energy = -5.83 ..(((((((.........(((((((((((((((...............))))))))))))))).........))))))).. model uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc ...({{(((.........([[{(((((({((((.....-..-----..))))}))))))}]]).....-...)))}})... target UCCCCUUAGUGAAUAUGAUGAUGGGUUUUAUAGAAUUG-UU-----UCUUAUUAGAUCCUGAAGUGCA-GUCCUGCAGCAU **** ^^ ****