------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAEUCK010003396.1:subseq_938242,100233_ Strand = + Positions = 50290 - 50370
 Found by:  Infernal (score=25.96) Covels (score=31.23)
 Stem2 length = 10   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -8.53

         ..(((((((.........(((((((((((((((..................)))))))))))))))........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((({({(.........{[[{(((((({((((..................))))}))))))}]]}..--....)})})))..
 target  CCCAGCCCCUCGUGGUCAUGAUGGGAAGAACUGAAAUGUCUCGUGGGCGCCUGGUCUUUCCCUGAUGU--CCCCGCGACUGCC
                           ****           ^^^                          ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = JAEUCK010003396.1:subseq_938242,100233_ Strand = - Positions = 12739 - 12674
 Found by:  Infernal (score=16.92) Covels (score=10.28)
 Stem2 length = 8   Apical loop length = 11   Insertion in stem2 = 0, 1
 Free Energy = -6.5

         ..(((((((.......(((((((((((((((...............))))))).))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca-ggcCuGAUGuuuuuucaugaccggc
         ..({{((((---....{[[{(({((((((.......--------....))))).)}))}]]}..--....))))}})..
 target  UAAAUUCCA---CCCAUGAAGAUCUGGUCACAAAUC--------CCUAGACUACGCUCAGAUUA--UGUCUGGAUAUGA
                         ****           ^^^                        ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = JAEUCK010003396.1:subseq_938242,100233_ Strand = + Positions = 67877 - 67976
 Found by:  Infernal (score=11.85) Covels (score=0.14)
 Stem2 length = 12   Apical loop length = 29   Insertion in stem2 = 0, 0
 Free Energy = -13.05

         ..(((((((...............(((((((((((((((...............................)))))))))))))))........)))))))..
 model   uucggucaugcg--------UuaAUGAcGgccuggcccuAAAcCcuuuuugggg----------------cgggccaggcCuGAUGuuuuuucaugaccggc
         (((((((((...............([[{((((((((((((.............................))))))))))))}]])..--....)))))))))
 target  AAGGUCUUUUAAUCCUGCUCUGAAUGACAGUAUAGUCAUGUGAACCUCUUAAGAAGGCCUGUACACUCUUGUGGCUAUAUUAGAAAC--UCUUAAAGACUUU
                                 ****              ^^                                     ****