------- SECIS element -- id:1 -- grade:A ---- Chromosome = JAEUCK010000639.1:subseq_660957,102920_ Strand = - Positions = 47421 - 47342 Found by: Infernal (score=25.59) Covels (score=39.26) Stem2 length = 9 Apical loop length = 17 Insertion in stem2 = 0, 0 Free Energy = -6.59 ..(((((((.........(((((((((((((((.................)))))))))))))))........))))))).. model uucggucaugcg--UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .(({((({(.........{[[{(({{(((((((.................)))))))}}))}]]}..--....)})))})). target GUGACAGGUUGCGUUGAAUGAUGUCUUCCUUGUAAACGGUGAGCCCACCAGCGAGGAUUACUGAUGC--AGACAGUUGAUGG **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = JAEUCK010000639.1:subseq_660957,102920_ Strand = + Positions = 20695 - 20780 Found by: Infernal (score=10.31) Covels (score=6.02) Stem2 length = 8 Apical loop length = 16 Insertion in stem2 = 0, 0 Free Energy = -10.54 ..(((((((....................(((((((((((((((..................)))))))))))))))........))))))).. model uucggucaugcg-------------UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc (({((((((((..................([[{((((({(((.------...............)))})))))}]])..--..))))))))})) target UUAGAGGACGAUAUGGUCAAAAUUGCAAGUGAUGAGUGCCUUG------ACUUUUGACCCAACAAAGCCACUUUGAAGA--CUUUGUCUUCCAG **** ****