------- SECIS element -- id:1 -- grade:A ---- Chromosome = JAEUCK010007266.1:subseq_110615,100586_ Strand = + Positions = 52342 - 52412 Found by: Infernal (score=32.21) Covels (score=23.77) Stem2 length = 11 Apical loop length = 14 Insertion in stem2 = 0, 0 Free Energy = -22.24 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ....(((((---....{[[{(((((((((((.....-.........)))))))))))}]]}..--..-.))))).... target UGCAGUCAC---UACAUGAUUCACUCUGGUUAAACC-CUUCCAGGCAGCCAGAGUGGUGACGA--UC-UGUGACCUGC **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = JAEUCK010007266.1:subseq_110615,100586_ Strand = + Positions = 73201 - 73273 Found by: Infernal (score=11.01) Covels (score=9.58) Stem2 length = 10 Apical loop length = 13 Insertion in stem2 = 0, 0 Free Energy = -13.42 ..(((((((.......(((((((((((((((...............))))))))))))))).........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc ((((((({(---....([[{(({(((((([(.....--........)]))))))}))}]]).....-...)}))))))) target UUCUCCCAG---GACAUGAAGGAUUCAUUAAGCAGG--GCCCACCGUGGAUGGAACCCGAAGGAAG-UUACAGGGAGGG **** ****