------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAEUCK010004288.1:subseq_82498,107009_ Strand = + Positions = 57366 - 57437
 Found by:  Infernal (score=29.55) Covels (score=33.38)
 Stem2 length = 11   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -10.34

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...({((((.--....{[[[((((((((([(.....-.........)])))))))))]]]}..--..-.))))})...
 target  UCUACUUGCA--UUAAUGAAAACAGAGACAUAAACU-AUGACCUAGGGGUUUCUGUUGGAUAG--UU-AGCAAUUUAG
                         ****           ^^^                       ****                 

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = JAEUCK010004288.1:subseq_82498,107009_ Strand = + Positions = 57791 - 57854
 Found by:  Infernal (score=25.5) Covels (score=16.12)
 Stem2 length = 9   Apical loop length = 10   Insertion in stem2 = 1, 0
 Free Energy = -7.3

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(({{((((---....([[{(((({(.((((......--.-----...)))))}))))}]])----..-.))))}})).
 target  UUUCCAUAG---UCAAUGAUGGUUCAAUAGGUAAACU--A-----AGUCCUAUAAACCUGAA----CU-CCUAUAUGGU
                         ****            ^^^                       ****                 

------- SECIS element -- id:3 -- grade:A ----
 Chromosome = JAEUCK010004288.1:subseq_82498,107009_ Strand = - Positions = 77360 - 77276
 Found by:  Infernal (score=19.26) Covels (score=18.57)
 Stem2 length = 11   Apical loop length = 11   Insertion in stem2 = 1, 0
 Free Energy = -17.11

         ..(((((((..............(((((((..(((.(((((...............))))).))))))))))............)))))))..
 model   uucggucaugcg-------UuaAUGAcGgc--cug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuu---u-uuucaugaccggc
         (((((((((..............{[[{((-[.((((((((......-..-----...))))))))]))}]]}........-...)))))))))
 target  CUUGGGGAGGGGGGUGGUUUCCAUGAUGG-AGUUUUCUCUUAAAUU-UG-----CAUGGAGGAAAGCCUGAUGUUUAGGA-AUGUUCCCCAGG
                                ****              ^^^                        ****