------- SECIS element -- id:1 -- grade:A ---- Chromosome = JAEUCK010003309.1:subseq_1,93924_ Strand = + Positions = 43966 - 44039 Found by: Infernal (score=14.8) Covels (score=24.34) Stem2 length = 9 Apical loop length = 18 Insertion in stem2 = 0, 1 Free Energy = -17.37 ..(((((((.......(((((((((((((((................))))))))).))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuugggg-cgggccagg-cCuGAUGuuuuuucaugaccggc ..([(((((---....{[[{(({(((((((..................)))))))}.))}]]}..--..-.)))))]).. target CCUGGGGAC---AGAAUGAAGCGCUCAGCGUCCCGGGAGCGUCUCCCUCGCUGAGGGGCCGAUGC--CU-CGUCCCAGAG **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = JAEUCK010003309.1:subseq_1,93924_ Strand = + Positions = 91231 - 91301 Found by: Infernal (score=13.71) Covels (score=3.72) Stem2 length = 9 Apical loop length = 15 Insertion in stem2 = 0, 0 Free Energy = -21.06 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .(((((({(---....{[[((((({(((({(...............)}))))})))))]]}----....)})))))). target UGGGGUGCU---UCUAGGAAGCUUUCCUCAUAAAAGAAUCAGAAGGGAGAGGCGAGCUGAG----GGGUAUCACCCUC **** ^^^ ****