------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAEUCK010003649.1:subseq_190560,100563_ Strand = + Positions = 51276 - 51343
 Found by:  Infernal (score=27.6) Covels (score=23.64)
 Stem2 length = 9   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -11.62

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...(((({(---....([[{(({(((((((......--------...)))))))}))}]])......-...)}))))...
 target  GUUGGAGCA---UUUAUGACGGAACAUGGCCAAACU--------UCAGUCAUGUACCUGAAGCCAUG-GUUUCUUCCCUC
                         ****           ^^^                       ****                   

------- SECIS element -- id:2 -- grade:C ----
 Chromosome = JAEUCK010003649.1:subseq_190560,100563_ Strand = - Positions = 52294 - 52220
 Found by:  Infernal (score=10.35)
 Stem2 length = 9   Apical loop length = 15   Insertion in stem2 = 1, 0
 Free Energy = -12.56

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(([(((((.......{[[{(((({{.(((((...............)))))}}))))}]]}----....)))))])).
 target  CCGAAGAGGAAGAGAUUGAUGUGGUGGACUGGACAUCAGAGGGGAGGCUGGUGCCCACUGAU----AUUCCCUCUGUGU
                         ****                                      ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = JAEUCK010003649.1:subseq_190560,100563_ Strand = + Positions = 17869 - 17949
 Found by:  Infernal (score=10.29) Covels (score=3.64)
 Stem2 length = 10   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -23.91

         ..(((((((.........((((((((((.(((((...............))))).))))))))))...........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuu--u-uuucaugaccggc
         .((((((((.........([[{{(((((({((((.....---.......))))}))))))}}]]).......-...)))))))).
 target  CCCCAGGAGUGUGGGUAUUGAAACCCACUCUCUGAAACG---GGAGUGCUGGAUGGUGGGCAGAAGAACCUG-UUCUUCCUGGGU
                           ****            ^^^                        ****