------- SECIS element -- id:1 -- grade:A ---- Chromosome = JAEUCK010007880.1:subseq_1,91679_ Strand = + Positions = 42323 - 42402 Found by: Infernal (score=22.4) Covels (score=29.5) Stem2 length = 9 Apical loop length = 13 Insertion in stem2 = 0, 0 Free Energy = -14.95 ..(((((((..............(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .({([(((((.............([[((({(((({(((.....--........)))}))))})))]])..--..-)))))])}). target CCGUGUCAGGAAUGGCAUCUCCAUGAAGGAGGGGCCCGAAGCC--CUCGUGGGCGGACCUCCCCUGAGCC--UG-UCUGAAGGGC **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = JAEUCK010007880.1:subseq_1,91679_ Strand = - Positions = 18643 - 18560 Found by: Infernal (score=12.47) Covels (score=7.95) Stem2 length = 9 Apical loop length = 14 Insertion in stem2 = 0, 0 Free Energy = -8.09 ..(((((((.............((((((((((.(((((...............))))).))))))))))..........))))))).. model uucggucaugcg------UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuu-u-uuucaugaccggc ...({(((((............([[(((((({((({(......---........)})))}))))))]])......-..)))))})... target UCUAUAAAGGCUAAAUGUACAGUGAAGAUCCCAGAUUUCAAGG---CCUGGCUCAUUCUUGGGUCUGAGAAUAUC-CUUCUUUCUCUC **** ^^ ****