------- SECIS element -- id:1 -- grade:A ----
 Chromosome = JAEUCK010006202.1:subseq_607748,100788_ Strand = + Positions = 51384 - 51455
 Found by:  Infernal (score=20.46) Covels (score=25.84)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -29.23

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (((((([(((--(...([[{(((((({(((.................)))}))))))}]])----..))))]))))))
 target  AGCCCCACUG--CUGAUGACGAGCCGCCUCUAACUGGUCUUGACCACGAGCUGGUUCUGAG----UUGCAGGGGGGCU
                         ****           ^^                        ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = JAEUCK010006202.1:subseq_607748,100788_ Strand = + Positions = 3438 - 3509
 Found by:  Infernal (score=10.72) Covels (score=5.57)
 Stem2 length = 8   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -11.67

         ..(((((((.........(((((((((((((...................)))))))))))))..........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuu-u-uuucaugaccggc
         (({(((({(.........{[[{((((({(((..........---------)))})))))}]]}......-...)}))))}))
 target  UGCACAUGCCCUAGAAGAUGACGUUGGUCCACUUCCACCUC---------UGGCCCAGCCGAUGCCAUC-GCUGGAUGUCCA
                           ****            ^^                       ****                   

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = JAEUCK010006202.1:subseq_607748,100788_ Strand = - Positions = 69293 - 69223
 Found by:  Infernal (score=10.18) Covels (score=13.25)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -7.84

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((([((.--....([[{(((([(((((......---........)))))]))))}]])..--....))])))...
 target  CAGGGUGUUG--UUUGUGAAGUCCAGGACUGAAAAU---AUAGAUAGAGUCUGGGACAGAGCU--GACAAAAGUUGCA
                         ****           ^^^                       ****