------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SJYR01000959.1:subseq_716558,100000_ Strand = + Positions = 23468 - 23546
 Found by:  Infernal (score=25.46) Covels (score=19.73)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 1, 0
 Free Energy = -18.58

         ..(((((((.......((((((((((.(((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         .(((({([(((.....([[[((((((.((((......--.........))))))))))]]]).......-.)))])})))).
 target  CGGAGUGAUGCGUCCAUGAAGUCACCAGCCCCAAGCC--CCUCGCGGUGGGUGGUGAUGGAACCGUCAA-AGCAGUUUUCUC
                         ****            ^^                        ****                    

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = SJYR01000959.1:subseq_716558,100000_ Strand = + Positions = 69447 - 69491
 Found by:  Infernal (score=12.88) Covels (score=5.36)
 Stem2 length = 10   Apical loop length = 13   Insertion in stem2 = 1, 0
 Free Energy = -13.62

         ..(((((((.......((((((((((.(((((................)))))))))))))))........)))))))..
 model   uccgggcaugcgUuaAUGAcGgccug-gcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugcccggc
         ----------------([[{((((((.((((..........-----...))))))))))}]])...--------------
 target  ----------------UGAAGGCCUGACCUGUCAAGCUGCU-----UCUCAGGCAGGUCAGAAAUU--------------
                         ****             ^^                        ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = SJYR01000959.1:subseq_716558,100000_ Strand = - Positions = 6825 - 6742
 Found by:  Infernal (score=10.81) Covels (score=7.33)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 1
 Free Energy = -11.1

         ..(((((((..............(((((((((((((((...............))))))).))))))))........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca-ggcCuGAUGuuuuuucaugaccggc
         ....((((((.............{[[{((((({((((.................))))}).))))}]]}..--...))))))....
 target  UCUACAGCUGCUCUGUAGUGGAAUGAGGUGCUUGCAUACACGGCACUGAGCACAGUGCCAGGCACGGACAA--AUAUAGCUGGUCU
                                ****                                      ****