Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137251/Desktop/SelR3.fa -t genomic_SJYR01001010.1]
Hostname: [am30753-101100u]

C4 Alignment:
------------
         Query: SPP00000023_1.0  Protein  Methionine-R-sufoxide reductase 3 (SelR3)  Homo sapiens  Complete
        Target: SJYR01001010.1:subseq(0,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold1012_size600957, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 429
   Query range: 92 -> 192
  Target range: 24613 -> 106809

     93 : LeuPheLysSerGluThrLysPheAspSerGlySer{G}  >>>> Target Intro :    105
          |||! !!:!|||||||||||||||||||||||||||{|}           72034 bp
          LeuCysArgSerGluThrLysPheAspSerGlySer{G}++                 
  24614 : CTTTGCAGGTCAGAAACCAAATTTGACTCCGGTTCA{G}gt................. :  24653

    106 : n 1 >>>>  {ly}TrpProSerPheHisAspValIleAsnSerGluAlaIleThrPh :    120
                    {||}||||||||||||||||||||||||||||||!!:!.!:!:|||||
                  ++{ly}TrpProSerPheHisAspValIleAsnSerAspValValThrPh
  24654 : ........ag{GT}TGGCCTTCATTCCACGACGTGATCAATTCTGATGTGGTGACGTT :  96729

    121 : eThrAspAspPheSerTyrGlyMetHisArgValGluThrSerCysSerGln  >>>> :    138
          ||||||||||||||||||||||||||||||||||||||||||||||||||||      
          eThrAspAspPheSerTyrGlyMetHisArgValGluThrSerCysSerGln++    
  96730 : CACAGATGACTTTTCCTATGGGATGCACAGGGTGGAGACCAGCTGCTCTCAGgt.... :  96785

    139 :  Target Intron 2 >>>>  CysGlyAlaHisLeuGlyHisIlePheAspAspGl :    149
               9865 bp           |||||||||||||||||||||||||||||||||||
                               ++CysGlyAlaHisLeuGlyHisIlePheAspAspGl
  96786 : .....................agTGCGGTGCTCACCTGGGGCACATTTTCGACGACGG : 106681

    150 : yProArgProThrGlyLysArgTyrCysIleAsnSerAlaAlaLeuSerPheThrPro :    168
          ||||||||||||||||||||||||||||||||||||||||:!!|||||||||||||||
          yProArgProThrGlyLysArgTyrCysIleAsnSerAlaSerLeuSerPheThrPro
 106682 : ACCTCGTCCAACCGGCAAAAGATACTGCATAAACTCGGCATCCTTGTCTTTCACCCCT : 106738

    169 : AlaAspSerSerGlyThrAlaGluGlyGlySerGlyValAlaSerProAlaGlnAlaA :    188
          |||!!:|||!!!|||    !!:!!|||..!|||!.!! !!.!|||||||||!  !.!|
          AlaGluSerThrGly---ProGlnGlyAsnSerAlaGlyGlySerProAlaProGlyA
 106739 : GCAGAGAGCACTGGC---CCCCAGGGGAACAGTGCGGGGGGCAGCCCGGCCCCTGGTG : 106795

    189 : spLysAlaGluLeu :    192
          |||||.!!||||||
          spLysThrGluLeu
 106796 : ACAAGACGGAGCTG : 106809

vulgar: SPP00000023_1.0 92 192 . SJYR01001010.1:subseq(0,200000) 24613 106809 + 429 M 12 36 S 0 1 5 0 2 I 0 72030 3 0 2 S 1 2 M 32 96 5 0 2 I 0 9861 3 0 2 M 36 108 G 1 0 M 18 54
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-21
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01001010.1:subseq(0,200000)	exonerate:protein2genome:local	gene	24614	106809	429	+	.	gene_id 1 ; sequence SPP00000023_1.0 ; gene_orientation +
SJYR01001010.1:subseq(0,200000)	exonerate:protein2genome:local	cds	24614	24650	.	+	.	
SJYR01001010.1:subseq(0,200000)	exonerate:protein2genome:local	exon	24614	24650	.	+	.	insertions 0 ; deletions 0
SJYR01001010.1:subseq(0,200000)	exonerate:protein2genome:local	splice5	24651	24652	.	+	.	intron_id 1 ; splice_site "Gt"
SJYR01001010.1:subseq(0,200000)	exonerate:protein2genome:local	intron	24651	96684	.	+	.	intron_id 1
SJYR01001010.1:subseq(0,200000)	exonerate:protein2genome:local	splice3	96683	96684	.	+	.	intron_id 0 ; splice_site "AG"
SJYR01001010.1:subseq(0,200000)	exonerate:protein2genome:local	cds	96685	96782	.	+	.	
SJYR01001010.1:subseq(0,200000)	exonerate:protein2genome:local	exon	96685	96782	.	+	.	insertions 0 ; deletions 0
SJYR01001010.1:subseq(0,200000)	exonerate:protein2genome:local	splice5	96783	96784	.	+	.	intron_id 2 ; splice_site "GT"
SJYR01001010.1:subseq(0,200000)	exonerate:protein2genome:local	intron	96783	106647	.	+	.	intron_id 2
SJYR01001010.1:subseq(0,200000)	exonerate:protein2genome:local	splice3	106646	106647	.	+	.	intron_id 1 ; splice_site "AG"
SJYR01001010.1:subseq(0,200000)	exonerate:protein2genome:local	cds	106648	106809	.	+	.	
SJYR01001010.1:subseq(0,200000)	exonerate:protein2genome:local	exon	106648	106809	.	+	.	insertions 0 ; deletions 1
SJYR01001010.1:subseq(0,200000)	exonerate:protein2genome:local	similarity	24614	106809	429	+	.	alignment_id 1 ; Query SPP00000023_1.0 ; Align 24614 93 36 ; Align 96687 106 96 ; Align 106648 138 108 ; Align 106756 175 54
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
