------- SECIS element -- id:1 -- grade:A ---- Chromosome = SJYR01001528.1:subseq_92235,100000_ Strand = - Positions = 96343 - 96273 Found by: Infernal (score=35.96) Covels (score=29.87) Stem2 length = 10 Apical loop length = 14 Insertion in stem2 = 0, 0 Free Energy = -23.34 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .({((((((---....{[[{(({((((((((.....-.........))))))))}))}]]}..--..-.))))))}). target CCCGGUCAC---UCUAUGAUUCUCUCUGGCUAAACC-CUUGCAGGCGGCCAGAGUGGUGAUGA--CC-UGUGACCCGC **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = SJYR01001528.1:subseq_92235,100000_ Strand = + Positions = 403 - 481 Found by: Infernal (score=10.02) Covels (score=1.3) Stem2 length = 9 Apical loop length = 22 Insertion in stem2 = 1, 1 Free Energy = -5.85 ..(((((((.......((((((((((.(((((....................))))))))).))))))........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC-----cuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc ..(({({((---(...{[[(((({((.((((......................))))))}).)))]]}..--..-)))})})).. target GGAUCACUG---UCCAUGAGGGCAGGGACACCCAGCUCUGACUCUAAAGCCCAGUGUCUAGCCUUGAUGU--UA-ACAUUAAUGG **** ^^ ****