_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-30
 Query name: gi|966002158|ref|XP_004020759.2| PREDICTED: methionine-R-sulfoxide reductase B1 [Ovis aries]
 Query range: 18-115  (total 115)

 Target: /data/www-rg/seblastian_results/139559083/tempfiles/temptarget.fasta
 Chromosome: SJYR01001528.1:subseq_92235,100000_ Strand: -
 Positions:
 -Exon 1  98713        98865
 -Exon 2  98285        98399
 -Exon 3  96779        96807

 Redox box: no

Query   PGIYVCAKCGYELFSSRSKYAHSSPWPTFTETIHADSVAKRPEHNRPGAIK <---Intron---> VSCGRCGNGLGHA-RTEAPKRGQSRFUIFSSSL
        ||||||||||||||||||||||||||||||||||/|||||/|||||||||| <   313bp    > ||||||||||||    / |||||||||||||||
Target  PGIYVCAKCGYELFSSRSKYAHSSPWPTFTETIHSDSVAKQPEHNRPGAIK                VSCGRCGNGLGHEFLNDGPKRGQSRFUIFSSSL
        cgatgtgatgtgcttactatgcttctcatagaactgaggaccgcaccggaa                gttgatgagcgcgtcaggcacgctcttataatt
        cgtatgcaggaattcggcaacacccgcctcactacagtcaacaaagcgcta                tcgggggagtgaattaagcaggacgtgttggct
        atccgtcgtctgcccctcgcacacagagctgccttctgcggagctgtacag                actcgtccggctgcgtttcatagcccatcccag
                                                                                                     *      

Query   KFIPKG <---Intron---> EETSASQGQ
        |||||| <   1477bp   > /||||||||
Target  KFIPKG                KETSASQGQ
        atacag                agatgtcgc
        attca                gaaccccaga
        gccta                caaccccgag
                                       
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 435 ; UGA-SECIS: 498

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SJYR01001528.1:subseq_92235,100000_ Strand = - Positions = 96343 - 96273
 Found by:  Infernal (score=35.96) Covels (score=29.87)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -23.34

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({((((((---....{[[{(({((((((((.....-.........))))))))}))}]]}..--..-.))))))}).
 target  CCCGGUCAC---UCUAUGAUUCUCUCUGGCUAAACC-CUUGCAGGCGGCCAGAGUGGUGAUGA--CC-UGUGACCCGC
                         ****           ^^^                       ****