------- SECIS element -- id:1 -- grade:B ---- Chromosome = SJYR01002566.1:subseq_259678,100000_ Strand = - Positions = 98885 - 98819 Found by: Infernal (score=29.06) Covels (score=13.38) Stem2 length = 9 Apical loop length = 10 Insertion in stem2 = 1, 0 Free Energy = -9.3 ..(((((((.......((((((((((.(((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ...((((((---....([[{(((({(.((((......--.-----...)))))}))))}]])..--....))))))... target UUUCCAUAG---UCAAUGAUGGUUCAAUAGGCAAACC--A-----GGUCCUAUAAACCUGAAUU--AUUUUUAUGGUUA **** ^^^ **** ------- SECIS element -- id:2 -- grade:A ---- Chromosome = SJYR01002566.1:subseq_259678,100000_ Strand = - Positions = 99318 - 99247 Found by: Infernal (score=28.33) Covels (score=28.55) Stem2 length = 10 Apical loop length = 14 Insertion in stem2 = 0, 0 Free Energy = -11.34 ..(((((((.......(((((((((((((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ...({((((.--....{[[{((((((((({(.....-.........)})))))))))}]]}..--..-.))))})... target UCUACUUGCA--UUAAUGAGAACAGAAACGUAAACU-AUAACCUAGGGGUUUCUGUUGGAUAG--UU-GGCAACUUAG **** ^^^ ****