Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137251/Desktop/SelP.fa -t genomic_SJYR01002566.1]
Hostname: [am30753-101100u]

C4 Alignment:
------------
         Query: SPP00000020_1.0  Protein  Selenoprotein P (SelP)  Homo sapiens  Complete
        Target: SJYR01002566.1:subseq(263856,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold2569_size522084, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 786
   Query range: 0 -> 177
  Target range: 101577 -> 97827

      1 : MetTrpArgSerLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProSerGlyGlyThrG :     20
          |||||||||.!!||||||||||||||||||||||||||||||! !!!!||||||||||
          MetTrpArgGlyLeuGlyLeuAlaLeuAlaLeuCysLeuLeuLeuThrGlyGlyThrG
 101577 : ATGTGGAGAGGCCTGGGGCTGGCTCTGGCTCTCTGCCTCCTCCTAACCGGAGGAACAG : 101520

     21 : luSerGlnAspGlnSerSerLeuCysLysGlnProProAlaTrpSerIleArgAspGl :     39
          ||||||||! !|||||||||! !|||||||||||||||||||||||||||!:!|||||
          luSerGlnGlyGlnSerSerTyrCysLysGlnProProAlaTrpSerIleLysAspGl
 101519 : AGAGCCAGGGCCAAAGCTCCTATTGTAAGCAACCTCCAGCCTGGAGCATAAAGGATCA : 101463

     40 : nAspProMetLeuAsnSerAsnGlySerValThrValValAlaLeuLeuGlnAlaSer :     58
          ||||||||||||||||||| !!||||||||||||||||||||||||||||||||||||
          nAspProMetLeuAsnSerTyrGlySerValThrValValAlaLeuLeuGlnAlaSer
 101462 : AGACCCTATGTTGAACTCCTATGGTTCAGTGACCGTGGTTGCTCTTCTTCAAGCCAGC : 101406

     59 : UnkTyrLeuCysIleLeuGlnAlaSer{Ly}  >>>> Target Intron 1 >>>> :     68
             ||||||||||||||||||||||||{!:}           1158 bp         
          ***TyrLeuCysIleLeuGlnAlaSer{Ar}++                         
 101405 : TGATACCTGTGCATTCTGCAGGCATCT{AG}gt......................... : 101372

     69 :   {s}LeuGluAspLeuArgValLysLeuLysLysGluGlyTyrSerAsnIleSerTy :     86
            {!}||||||||||||||||||||||||:!!|||||||||||||||!!.||||||||
          ++{g}LeuGluAspLeuArgValLysLeuGluLysGluGlyTyrSerLysIleSerTy
 101371 : ag{a}tTGGAAGACCTGCGAGTAAAACTGGAGAAAGAAGGATATTCTAAGATCTCCTA : 100164

     87 : rIleValValAsnHisGlnGlyIleSerSerArgLeuLysTyrThrHisLeuLysAsn :    105
          |:!!|||||||||||||||! !|||||||||||||||||||||  !||||||||||||
          rValValValAsnHisGlnGluIleSerSerArgLeuLysTyrGluHisLeuLysAsn
 100163 : TGTTGTTGTTAATCATCAAGAAATCTCTTCTCGATTAAAATATGAGCATCTTAAAAAT : 100107

    106 : LysValSerGluHisIleProValTyrGlnGlnGluGluAsnGlnThrAspValTrpT :    125
          ||||||||||||||||||||||||||||||||||||:!!:!!||| !!||||||||||
          LysValSerGluHisIleProValTyrGlnGlnGluLysAspGlnProAspValTrpT
 100106 : AAGGTTTCAGAACATATTCCTGTTTACCAACAAGAAAAAGACCAACCAGATGTCTGGA : 100047

    126 : hrLeuLeuAsnGlySerLysAspAspPheLeuIleTyrAsp{Ar}  >>>> Target :    139
          ||||||||||||||:::||||||||||||||||||||||||{||}           20
          hrLeuLeuAsnGlyAsnLysAspAspPheLeuIleTyrAsp{Ar}++           
 100046 : CTCtcttaaatggaaataaagatgACTTCCTCATATATGAC{AG}gt........... : 100001

    140 :  Intron 2 >>>>  {g}CysGlyArgLeuValTyrHisLeuGlyLeuProPheSer :    152
          61 bp           {|}|||||||||||||||||||||||||||||||||!:!|||
                        ++{g}CysGlyArgLeuValTyrHisLeuGlyLeuProTyrSer
 100000 : ..............ag{A}TGTGGCCGCCTTGTATATCATCTTGGTTTGCCTTATTCC :  97905

    153 : PheLeuThrPheProTyrValGluGluAlaIleLysIleAlaTyrCysGluLysLysC :    172
          |||||||||||| !!|||||||||!!::!!||||||! !!.!||||||||| ! ||||
          PheLeuThrPheThrTyrValGluAspSerIleLysThrValTyrCysGluAspLysC
  97904 : TTCCTAACTTTCACATATGTAGAAGATTCCATTAAGACTGTTTACTGTGAAGATAAAT :  97845

    173 : ysGlyAsnCysSerLeu :    177
          |||||||||||||||||
          ysGlyAsnCysSerLeu
  97844 : GTGGAAACTGCTCTCTC :  97828

vulgar: SPP00000020_1.0 0 177 . SJYR01002566.1:subseq(263856,200000) 101577 97827 - 786 M 67 201 S 0 2 5 0 2 I 0 1154 3 0 2 S 1 1 M 70 210 S 0 2 5 0 2 I 0 2057 3 0 2 S 1 1 M 38 114
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-21
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	gene	97828	101577	786	-	.	gene_id 1 ; sequence SPP00000020_1.0 ; gene_orientation +
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	cds	101375	101577	.	-	.	
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	exon	101375	101577	.	-	.	insertions 0 ; deletions 0
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	splice5	101373	101374	.	-	.	intron_id 1 ; splice_site "GT"
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	intron	100217	101374	.	-	.	intron_id 1
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	splice3	100217	100218	.	-	.	intron_id 0 ; splice_site "ag"
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	cds	100004	100216	.	-	.	
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	exon	100004	100216	.	-	.	insertions 0 ; deletions 0
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	splice5	100002	100003	.	-	.	intron_id 2 ; splice_site "GT"
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	intron	97943	100003	.	-	.	intron_id 2
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	splice3	97943	97944	.	-	.	intron_id 1 ; splice_site "AG"
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	cds	97828	97942	.	-	.	
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	exon	97828	97942	.	-	.	insertions 0 ; deletions 0
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	similarity	97828	101577	786	-	.	alignment_id 1 ; Query SPP00000020_1.0 ; Align 101578 1 201 ; Align 100216 69 210 ; Align 97942 140 114
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000020_1.0  Protein  Selenoprotein P (SelP)  Homo sapiens  Complete
        Target: SJYR01002566.1:subseq(263856,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold2569_size522084, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 413
   Query range: 230 -> 381
  Target range: 95852 -> 95384

   231 : AlaProAsnAlaProThrHisProAlaProProGlyLeu<->HisHisHisHisLysHis :   249
         .!!|||:!!.!!|||  !:!!||| !!||| !!||||||   ||||||||||||:::|||
         ThrProAspThrProGluAsnProProProSerGlyLeuHisHisHisHisHisArgHis
 95852 : ACACCAGACACCCCTGAGAATCCCCCTCCTTCAGGtcttcatcaccaccaccataggCAC : 95795

   250 : LysGlyGlnHisArgGlnGlyHisProGluAsnArgAspMetPro<->AlaSerGluAsp :   268
         ||||||!!.!!.|||||||||||| !!!!:||| !!|||!  |||   !.!||||||:!!
         LysGlyHisGlnArgGlnGlyHisSerAspAsnCysAspThrProValGlySerGluAsn
 95794 : AAGGGTCACCAAAGACAGGGTCACTCAGATAACTGTGATACACCAGTAGGAAGTGAAAAT : 95735

   269 : LeuGln<->AspLeu<->GlnLysLysLeuCysArgLysArgCysIleAsnGlnLeuLeu :   286
         ||||||   ..!|||   ||||||||||||!! |||||||||||||||||||||||||||
         LeuGlnLeuSerLeuProGlnLysLysLeu***ArgLysArgCysIleAsnGlnLeuLeu
 95734 : TTACAACTTTCTCTTCCACAAAAGAAGCTCTGACGAAAGAGATGCATAAATCAGTTACTC : 95675

   287 : CysLysLeuProThrAspSerGluLeuAlaProArgSerUnkCysCysHisCysArgHis :   306
         !! :!!!!!|||! !|||||||||! !|||  !!!!|||   ||||||||||||||||||
         ***GlnPheProLysAspSerGluSerAlaLeuSerSerCysCysCysHisCysArgHis
 95674 : TGACAGTTTCCCAAAGATTCAGAATCTGCTTTGAGTAGCTGCTGTTGCCACTGTCGACAT : 95615

   307 : LeuIlePheGluLysThrGlySerAlaIleThrUnkGlnCysLysGluAsnLeuProSer :   326
         |||:!!|||||||||||||||||||||||||||   ||||||! !|||||||||||||||
         LeuValPheGluLysThrGlySerAlaIleThr***GlnCysThrGluAsnLeuProSer
 95614 : CTGGTATTTGAAAAAACAGGGTCTGCAATCACCTGACAGTGTACAGAAAACCTCCCCTCT : 95555

   327 : LeuCysSerUnkGlnGlyLeuArgAlaGluGluAsnIleThrGluSerCysGlnUnkArg :   346
         |||||||||   |||||||||  !||||||||||||:!!! !||||||!! |||   |||
         LeuCysSer***GlnGlyLeuLeuAlaGluGluAsnValIleGluSer***Gln***Arg
 95554 : TTATGTAGCTGACAGGGCCTTTTGGCAGAGGAGAACGTCATTGAATCTTGACAGTGACGT : 95495

   347 : LeuProProAlaAlaUnkGlnIleSer<->GlnGlnLeuIleProThrGluAlaSerAla :   365
         |||||||||||||||   |||  !:!!   |||||||||! !||||||! !||||||.!!
         LeuProProAlaAla***GlnAlaAlaGlyGlnGlnLeuAsnProThrGlyAlaSerThr
 95494 : TTGCCTCCAGCTGCCTGACAGGCAGCAGGTCAGCAGCTCAACCCCACAGGAGCCAGCACC : 95435

   366 : SerUnkArgUnkLysAsnGlnAlaLysLysUnkGluUnkProSerAsn :   381
         !.!   !!!   ||||||:!!||||||! !   :!!   |||||||||
         Lys***Ser***LysAsnLysAlaLysMet***Lys***ProSerAsn
 95434 : AAATGAAGCTGAAAAAATAAGGCCAAAATGTGAAAATGACCTtcaaat : 95385

vulgar: SPP00000020_1.0 230 381 . SJYR01002566.1:subseq(263856,200000) 95852 95384 - 413 M 13 39 G 0 3 M 21 63 G 0 3 M 6 18 G 0 3 M 2 6 G 0 3 M 83 249 G 0 3 M 26 78
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-21
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	gene	95385	95852	413	-	.	gene_id 2 ; sequence SPP00000020_1.0 ; gene_orientation .
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	cds	95385	95852	.	-	.	
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	exon	95385	95852	.	-	.	insertions 15 ; deletions 0
SJYR01002566.1:subseq(263856,200000)	exonerate:protein2genome:local	similarity	95385	95852	413	-	.	alignment_id 2 ; Query SPP00000020_1.0 ; Align 95853 231 39 ; Align 95811 244 63 ; Align 95745 265 18 ; Align 95724 271 6 ; Align 95715 273 249 ; Align 95463 356 78
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
