Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137251/Desktop/SelI.fa -t genomic_SJYR01000772.1]
Hostname: [am30923-101066u]

C4 Alignment:
------------
         Query: SPP00000015_1.0  Protein  Selenoprotein I (SelI)  Homo sapiens  Complete
        Target: SJYR01000772.1:subseq(596234,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold763_size848455, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 959
   Query range: 160 -> 397
  Target range: 100458 -> 101173

    161 : TrpValValLeuPheSerPheIleLeuSerHisTrpGluLysTyrAsnThrGlyIleL :    180
          ||||||||||||||||||||||||  !|||||||||! !|||! !|||||||||||||
          TrpValValLeuPheSerPheIleProSerHisTrpGlyLysCysAsnThrGlyIleL
 100459 : TgggtagttttgttttctttcatcccGTCTCACTGGGGAAAGTGTAACACAGGGATTC : 100516

    181 : euPheLeuProTrpGlyTyrAspIleSerGlnValThrIleSerPheValTyrIleVa :    199
          |||||||||||||||||||||||!!:|||!:!||||||:!!||||||||||||! !||
          euPheLeuProTrpGlyTyrAspMetSerArgValThrValSerPheValTyrArgVa
 100517 : TTTTCCTGCCATGGGGATATGACATGAGCCGGGTGACTGTTTCTTTTGTCTACAGAGT : 100573

    200 : lThrAlaValValGlyValGluAlaTrpTyrGluProPheLeuPheAsnPheLeuTyr :    218
          |.!!||||||||||||||||||||||||!! |||||||||||||||||||||||||||
          lAlaAlaValValGlyValGluAlaTrp***GluProPheLeuPheAsnPheLeuTyr
 100574 : GGCTGCGGTTGTGGGAGTTGAGGCCTGGTAGGAACCTTTCCTGTTTAATTTCTTATAT : 100630

    219 : ArgAspLeuPheThrAlaMetIleIleGlyCysAlaLeuCysValThrLeuProMetS :    238
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ArgAspLeuPheThrAlaMetIleIleGlyCysAlaLeuCysValThrLeuProMetS
 100631 : AGAGACCTATTCACTGCCATGATCATTGGTTGTGCACTGTGCGTGACTCTTCCAATGA : 100690

    239 : erLeuLeuAsnPhePheArgSerTyrLysAsnAsnThrLeuLysLeuAsnSerValTy :    257
          ||||||||!:!|||||||||||||||||||||||||||||||||! !|||||||||||
          erLeuLeuSerPhePheArgSerTyrLysAsnAsnThrLeuLysHisAsnSerValTy
 100691 : GTTTGTTAAGTTTTTTTAGAAGCTATAAAAATAACACATTGAAACACAATTCAGTCTA : 100747

    258 : rGluAlaMetValProLeuPheSerProCysLeuLeuPheIleLeuSerThrAlaTrp :    276
          |||||||:!!||||||:::||||||||||||||||||||||||||| !!|||||||||
          rGluAlaValValProValPheSerProCysLeuLeuPheIleLeuProThrAlaTrp
 100748 : TGAAGCTGTGGttcctgtcttttctccatgtctGCTGTTCATTTTGCCGACAGCATGG : 100804

    277 : IleLeuTrpSerProSerAspIle--LeuGluLeuHisProArgValPheTyrPheMe :    295
          ||||||  !||| !!|||||||||##   |||||||||||||||:!!||||||!!.||
          IleLeuLeuSerAlaSerAspIle##---GluLeuHisProArgIlePheTyrLeuMe
 100805 : ATCCTCCTGTCAGCTTCAGATATTCA---GAGTTACACCCTAGAATATTCTACTTAAT : 100860

    296 : tValGlyThrAlaPheAlaAsnSerThrCysGlnLeuIleValCysGlnMetSerSer :    314
          |||||||||||||||||||! !||||||||||||||||||||||||||||||||||||
          tValGlyThrAlaPheAlaIleSerThrCysGlnLeuIleValCysGlnMetSerSer
 100861 : GGTTGGAACAGCCTTTGCCATCAGCACGTGTCAGCTGATTGTCTGTCAGATGAGCAGT : 100917

    315 : ThrArgCysProThrLeuAsnTrpLeuLeuValProLeuPheLeuValValLeuValV :    334
          ||||||||||||||||||||| !!||||||:!!|||||||||:!!:!!|||:!!||||
          ThrArgCysProThrLeuAsnArgLeuLeuLeuProLeuPheValIleValMetValV
 100918 : ACCCGGTGCCCAACTTTGAATCGGTTGCTACTTCCTCTTTTTGTGATTGTCATGGTGG : 100977

    335 : alAsnLeuGlyValAlaSerTyrValGluSer-----IleLeuLeuTyrThrLeuThr :    351
          |||||:!!||||||||| !! ! |||||||||#####:!!|||:!!!:!! !||||||
          alAsnValGlyValAlaProGlnValGluSer#####ValLeuMetPheMetLeuThr
 100978 : TGAATGTAGGAGTAGCCCCGCAGGTTGAGAGCTAAATGTTCTGATGTTCATGTTGACG : 101033

    352 : ThrAlaPheThrLeuAlaHisIleHisTyrGlyValArgValValLysGlnLeuSerS :    371
          .!!||||||||||||||||||:!!|||||||||||||||||||||||| !!||||||!
          AlaAlaPheThrLeuAlaHisValHisTyrGlyValArgValValLys***LeuSerA
 101034 : GCTGCTTTCACTCTGGCCCACGTCCACTATGGAGTACGAGTGGTAAAGTAGCTGAGCA : 101093

    372 : erHisPheGlnIleTyrProPheSerLeuArgLysProAsnSerAspUnkLeuGlyMe :    390
          :!  !|||!!.||||||||||||||||||||||||||||||||||||   ||||||:!
          snSerPheHisIleTyrProPheSerLeuArgLysProAsnSerAsp***LeuGlyVa
 101094 : ACAGTTTTCACATTTACCCCTTCTCACTGAGAAAACCAAACTCGGATTGACTAGGAGT : 101150

    391 : tGluGluLysAsnIleGlyLeu :    397
          !|||||||||||||||||||||
          lGluGluLysAsnIleGlyLeu
 101151 : GGAAGAAAAGAATATTGGCCTG : 101173

vulgar: SPP00000015_1.0 160 397 . SJYR01000772.1:subseq(596234,200000) 100458 101173 + 959 M 124 372 F 0 2 G 1 0 M 59 177 F 0 5 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01000772.1:subseq(596234,200000)	exonerate:protein2genome:local	gene	100459	101173	959	+	.	gene_id 1 ; sequence SPP00000015_1.0 ; gene_orientation .
SJYR01000772.1:subseq(596234,200000)	exonerate:protein2genome:local	cds	100459	101173	.	+	.	
SJYR01000772.1:subseq(596234,200000)	exonerate:protein2genome:local	exon	100459	101173	.	+	.	insertions 0 ; deletions 1 ; frameshifts 7
SJYR01000772.1:subseq(596234,200000)	exonerate:protein2genome:local	similarity	100459	101173	959	+	.	alignment_id 1 ; Query SPP00000015_1.0 ; Align 100459 161 372 ; Align 100833 286 177 ; Align 101015 345 159
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000015_1.0  Protein  Selenoprotein I (SelI)  Homo sapiens  Complete
        Target: SJYR01000772.1:subseq(596234,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold763_size848455, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 676
   Query range: 1 -> 146
  Target range: 99999 -> 100431

      2 : AlaGlyTyrGluTyrValSerProGluGlnLeuAlaGlyPheAspLysTyrLysTyrS :     21
          |||..!|||||||||||||||||||||||||||||||||||| !!|||||||||||||
          AlaAsnTyrGluTyrValSerProGluGlnLeuAlaGlyPheHisLysTyrLysTyrS
 100000 : GCAAATTACGAATACGTGAGCCCAGAGCAGCTGGCTGGCTTTCATAAGTACAAGTACA : 100057

     22 : erAlaValAspThrAsnProLeuSerLeuTyrValMetHisProPheTrpAsnThrIl :     40
          ||||||||||||||||||||||||||:!!|||||||||||||||||||||||||||:!
          erAlaValAspThrAsnProLeuSerValTyrValMetHisProPheTrpAsnThrVa
 100058 : GTGCTGTGGATACCAATCCACTCTCTGTGTATGTCATGCACCCATTTTGGAACACTGT : 100114

     41 : eValLysValPheProThrTrpLeuAlaProAsnLeuIleThrPheSerGlyPheLeu :     59
          !|||||||||||||||||||||||||||||||||||||||.!!|||||||||||||||
          lValLysValPheProThrTrpLeuAlaProAsnLeuIleAlaPheSerGlyPheLeu
 100115 : AGTAAAGGTATTTCCTACTTGGCTGGCTCCAAATTTGATAGCCTTCTCTGGCTTTCTG : 100171

     60 : LeuValValPheAsnPheLeuLeuMetAlaTyrPheAspProAspPheTyrAlaSerA :     79
          |||!.!||||||||||||||||||||||||||||||||||||||||||||||||||||
          LeuAlaValPheAsnPheLeuLeuMetAlaTyrPheAspProAspPheTyrAlaSerA
 100172 : CTGGCTGTGTTCAATTTTCTACTTATGGCATACTTTGATCCTGACTTTTATGCTTCAG : 100231

     80 : laProGlyHisLysHisValProAspTrpValTrpIleValValGlyIleLeuAsnPh :     98
          |||||||||||||||||||||||||||||||||||||||||||||||||||||!:!||
          laProGlyHisLysHisValProAspTrpValTrpIleValValGlyIleLeuSerPh
 100232 : CACCAGGTCACAAGCATGTACCAGACTGGGTCTGGATTGTAGTGGGCATCCTCAGCTT : 100288

     99 : eValAlaTyrThrLeuAspGlyValAspGlyLysGlnAlaArgArgThrAsnSerSer :    117
          |:!!||||||! !|||||||||||||||||||||||||||!.!|||||||||||||||
          eMetAlaTyrMetLeuAspGlyValAspGlyLysGlnAlaHisArgThrAsnSerSer
 100289 : CATGGCCTACATGCTAGATGGTGTGGATGGAAAGCAAGCCCACAGAACCAATTCTAGC : 100345

    118 : ThrProLeuGlyGluLeuPheAspHisGlyLeuAspSerTrpSerCysValTyrPheV :    137
          |||! !||||||||||||||||||||||||||||||   ||||||||||||||||||:
          ThrLeuLeuGlyGluLeuPheAspHisGlyLeuAsp---TrpSerCysValTyrPheL
 100346 : ACTCTGCTTGGGGAGCTTTTTGACCATGGCCTGGAC---TGGTCATGTGTTTACTTTT : 100402

    138 : alValThrValTyrSerIlePheGlyArg :    146
          !!  !:!!|||!:!  !.!!!::  !|||
          euSerSerValPheHisPheTrpThrArg
 100403 : TGTCATCTGTATTCCATTTTTGGACGAGG : 100431

vulgar: SPP00000015_1.0 1 146 . SJYR01000772.1:subseq(596234,200000) 99999 100431 + 676 M 128 384 G 1 0 M 16 48
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01000772.1:subseq(596234,200000)	exonerate:protein2genome:local	gene	100000	100431	676	+	.	gene_id 2 ; sequence SPP00000015_1.0 ; gene_orientation .
SJYR01000772.1:subseq(596234,200000)	exonerate:protein2genome:local	cds	100000	100431	.	+	.	
SJYR01000772.1:subseq(596234,200000)	exonerate:protein2genome:local	exon	100000	100431	.	+	.	insertions 0 ; deletions 1
SJYR01000772.1:subseq(596234,200000)	exonerate:protein2genome:local	similarity	100000	100431	676	+	.	alignment_id 2 ; Query SPP00000015_1.0 ; Align 100000 2 384 ; Align 100384 131 48
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
