Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137251/Desktop/Sel15.fa -t genomic_SJYR01001197.1]
Hostname: [am30923-101066u]

C4 Alignment:
------------
         Query: SPP00000013_1.0  Protein  Selenoprotein 15 (Sel15)  Homo sapiens  Complete
        Target: SJYR01001197.1:subseq(0,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold1187_size1341142, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 548
   Query range: 0 -> 124
  Target range: 56387 -> 16678

     1 : MetValAlaMetAlaAlaGlyProSerGlyCysLeuValProAlaPheGlyLeuArgLeu :    20
         :!!|||!.!||||||!.! !!|||..!!.!!! !!!! !! !||||||||||||||||||
         ValValValMetAlaGlyArgProAspAlaTrpPheAspArgAlaPheGlyLeuArgLeu
 56387 : GTGGTAGTGATGGCGGGCCGGCCGGATGCGTGGTTTGACCGGGCGTTTGGGCTGCGACTG : 56330

    21 : LeuLeuAlaThrValLeuGlnAla  >>>> Target Intron 1 >>>>  ValSerA :    31
         |||||||||||||||||||||.!!           6219 bp           |||:::|
         LeuLeuAlaThrValLeuGlnThr++                         ++ValThrA
 56329 : CTGCTGGCGACCGTGCTTCAGACGgt.........................aggtcactg : 50078

    32 : laPheGlyAlaGluPheSerSerGluAlaCysArgGluLeuGlyPheSerSerAsnLeuL :    51
         ||...|||||||||||||||||||||:!!|||||||||||||||||||||||||||||||
         laLeuGlyAlaGluPheSerSerGluSerCysArgGluLeuGlyPheSerSerAsnLeuL
 50077 : cattgggagcagagtttTCCTCAGAGTCTTGCAGAGAGTTAGGTTTCTCCAGCAACTTGC : 50018

    52 : euCysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspProAspCysA :    71
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         euCysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspProAspCysA
 50017 : TCTGCAGCTCCTGTGATTTGCTTGGACAGTTCAACCTTCTGCAGCTGGATCCTGACTGTA : 49958

    72 : rgGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys  >>>> Target Intro :    85
         |||||||||||||||||||||||||||||||||||||||||           17198 bp
         rgGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys++                 
 49957 : GAGGGTGCTGTCAGGAAGAAGCACAATTTGAAACTAAAAAGgt................. : 49914

    86 : n 2 >>>>  LeuTyrAlaGlyAlaIleLeuGluValCysGlyUnkLysLeuGlyArgPh :   101
                   |||||||||||||||||||||||||||||||||   ||||||||||||||
                 ++LeuTyrAlaGlyAlaIleLeuGluValCysGly***LysLeuGlyArgPh
 49913 : ........agcTGTATGCAGGAGCTATTCTTGAAGTCTGTGGATGAAAATTGGGGAGGTT : 32670

   102 : eProGlnValGln{V}  >>>> Target Intron 3 >>>>  {al}CysProTrpPh :   110
         |||||||||||||{|}           15920 bp          {||}||| !! !!||
         eProGlnValGln{V}++                         ++{al}CysSerArgPh
 32669 : CCCTCAAGTCCAA{G}gt.........................ag{TA}TGTTCGCGGTT : 16723

   111 : eArgProCysIleLysAlaPheGlyArgGlnTrpGluHisCys :   124
         ||||||||||  !||||||||||||||||||||||||||||||
         eArgProCysAlaLysAlaPheGlyArgGlnTrpGluHisCys
 16722 : CAGACCCTGTGCTAAAGCTTTTGGACGACAGTGGGAACATTGC : 16679

vulgar: SPP00000013_1.0 0 124 . SJYR01001197.1:subseq(0,200000) 56387 16678 - 548 M 28 84 5 0 2 I 0 6215 3 0 2 M 56 168 5 0 2 I 0 17194 3 0 2 M 21 63 S 0 1 5 0 2 I 0 15916 3 0 2 S 1 2 M 18 54
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	gene	16679	56387	548	-	.	gene_id 1 ; sequence SPP00000013_1.0 ; gene_orientation +
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	cds	56304	56387	.	-	.	
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	exon	56304	56387	.	-	.	insertions 0 ; deletions 0
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	splice5	56302	56303	.	-	.	intron_id 1 ; splice_site "GT"
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	intron	50085	56303	.	-	.	intron_id 1
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	splice3	50085	50086	.	-	.	intron_id 0 ; splice_site "ag"
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	cds	49917	50084	.	-	.	
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	exon	49917	50084	.	-	.	insertions 0 ; deletions 0
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	splice5	49915	49916	.	-	.	intron_id 2 ; splice_site "GT"
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	intron	32719	49916	.	-	.	intron_id 2
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	splice3	32719	32720	.	-	.	intron_id 1 ; splice_site "ag"
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	cds	32655	32718	.	-	.	
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	exon	32655	32718	.	-	.	insertions 0 ; deletions 0
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	splice5	32653	32654	.	-	.	intron_id 3 ; splice_site "GT"
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	intron	16735	32654	.	-	.	intron_id 3
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	splice3	16735	16736	.	-	.	intron_id 2 ; splice_site "AG"
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	cds	16679	16734	.	-	.	
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	exon	16679	16734	.	-	.	insertions 0 ; deletions 0
SJYR01001197.1:subseq(0,200000)	exonerate:protein2genome:local	similarity	16679	56387	548	-	.	alignment_id 1 ; Query SPP00000013_1.0 ; Align 56388 1 84 ; Align 50085 29 168 ; Align 32719 85 63 ; Align 16733 107 54
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
