_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-19
 Query name: gi|820980696|ref|XP_012371964.1| PREDICTED: 15 kDa selenoprotein, partial [Octodon degus]
 Query range: 57-145  (total 145)

 Target: /data/www-rg/seblastian_results/637895040/tempfiles/temptarget.fasta
 Chromosome: SJYR01001197.1:subseq_1,100000_ Strand: -
 Positions:
 -Exon 1  32654        32741
 -Exon 2  19169        19218
 -Exon 3  16605        16733

 Redox box: no

Query   EAQFETKKLYAGAILEVCGUKLGRFPQVQA <---Intron---> FVRSDKPKLFRGLQIK <---Intron---> YVRGSDPVLKLLDDSGNIAEEL
        /  |   /|||||||||||||||||||||| <  13435bp   > ||||||||||/||||| <   2435bp   > ||||||||||||||||||||||
Target  KLMFFLLQLYAGAILEVCGUKLGRFPQVQA                FVRSDKPKLFKGLQIK                YVRGSDPVLKLLDDSGNIAEEL
        acattctcctgggacggtgtatgatccgcg                tgaagacactagccaa                tgcgtgcgcactggagaagggc
        attttttatacgcttatgggatggtcata                cttggaacattagtata                atggcacttattaaggatcaat
        atgtttgggtaatttactaaagggctaca                tccattacaacaagacg                ttctactgagtgcctgcttaaa
                           *                                                                                

Query   SILKWNTDSVEEFLSEKLERI
        |||||||||||||||||||||
Target  SILKWNTDSVEEFLSEKLERI
        aacataagagggtcagatgca
        gttagacagtaattgaatagt
        cccagcactaaacgtgggaca
                             
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 571 ; UGA-SECIS: 778

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SJYR01001197.1:subseq_1,100000_ Strand = - Positions = 16033 - 15956
 Found by:  Infernal (score=30.75) Covels (score=23.97)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 1
 Free Energy = -16.06

         ..(((((((.......(((((((((((((((...............))))))))).)))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuu-uuucaugaccggc
         (((((((((((.....{[[(({(((((((((...............))))))))).}))]]}.....-)-))))))))))
 target  CAAAGAUUUGCAUUAAUGAAGACUACACAGAAAACCUUCCUGAGGAUUUGUGUGGACCUGAUAUUUA-G-CAAAUUUUUG
                         ****           ^^^                        ****