Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137251/Desktop/MsrA.fa -t genomic_SJYR01000661.1]
Hostname: [am30923-101066u]

C4 Alignment:
------------
         Query: SPP00000012_1.0  Protein  Methionine sulfoxide reductase A (MsrA)  Homo sapiens  Complete
        Target: SJYR01000661.1:subseq(831870,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold662_size1282423, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 222
   Query range: 181 -> 230
  Target range: 84540 -> 84687

   182 : ValLeuSerGluHisGlyPheGlyProIleThrThrAspIleArgGluGlyGlnThrPhe :   201
         ||||||||||||! !|||||||||! !||||||||||||||||||||||||||||||! !
         ValLeuSerGluProGlyPheGlyLeuIleThrThrAspIleArgGluGlyGlnThrSer
 84541 : GTTCTGTCGGAGCCTGGTTTCGGCCTGATCACCACGGACATCCGGGAGGGACAGACCTCT : 84598

   202 : TyrTyrAlaGluAspTyrHisGlnGlnTyrLeuSerLysAsnProAsnGlyTyrCysGly :   221
         ||||||  !||||||||||||:!!|||||||||.!!|||||||||:!!|||!:!|||! !
         TyrTyrMetGluAspTyrHisGluGlnTyrLeuGlyLysAsnProAspGlyPheCysAsp
 84599 : TATTACATGGAGGATTACCACGAGCAGTACCTAGGCAAGAACCCCGATGGGTTCTGTGAC : 84658

   222 : LeuGlyGlyThrGlyValSerCysPro :   230
         |||||||||||||||||||||||||||
         LeuGlyGlyThrGlyValSerCysPro
 84659 : CTCGGCGGCACCGGAGTGTCCTGTCCC : 84687

vulgar: SPP00000012_1.0 181 230 . SJYR01000661.1:subseq(831870,200000) 84540 84687 + 222 M 49 147
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01000661.1:subseq(831870,200000)	exonerate:protein2genome:local	gene	84541	84687	222	+	.	gene_id 1 ; sequence SPP00000012_1.0 ; gene_orientation .
SJYR01000661.1:subseq(831870,200000)	exonerate:protein2genome:local	cds	84541	84687	.	+	.	
SJYR01000661.1:subseq(831870,200000)	exonerate:protein2genome:local	exon	84541	84687	.	+	.	insertions 0 ; deletions 0
SJYR01000661.1:subseq(831870,200000)	exonerate:protein2genome:local	similarity	84541	84687	222	+	.	alignment_id 1 ; Query SPP00000012_1.0 ; Align 84541 182 147
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000012_1.0  Protein  Methionine sulfoxide reductase A (MsrA)  Homo sapiens  Complete
        Target: SJYR01000661.1:subseq(831870,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold662_size1282423, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 285
   Query range: 181 -> 235
  Target range: 100161 -> 99999

    182 : ValLeuSerGluHisGlyPheGlyProIleThrThrAspIleArgGluGlyGlnThrP :    201
          ||||||||||||||||||||||||  !|||||||||||||||||||||||||||||||
          ValLeuSerGluHisGlyPheGlyValIleThrThrAspIleArgGluGlyGlnThrP
 100161 : GTTCTGTCGGAGCATGGTTTCGGCGTGATCACCACGGACATCCGGGAGGGACAGACCT : 100104

    202 : heTyrTyrAlaGluAspTyrHisGlnGlnTyrLeuSerLysAsnProAsnGlyTyrCy :    220
          |||||||||||||||||||||||||||||||||||||||||||||||:!!||||||||
          heTyrTyrAlaGluAspTyrHisGlnGlnTyrLeuSerLysAsnProAspGlyTyrCy
 100103 : TTTACTATGCGGAAGATTACCACCAGCAGTACCTGAGCAAGAACCCCGACGGGTACTG : 100047

    221 : sGlyLeuGlyGlyThrGlyValSerCysProValGlyIleLysLys :    235
          |||||||||||||||||||||||||||||||:!!||||||||||||
          sGlyLeuGlyGlyThrGlyValSerCysProLeuGlyIleLysLys
 100046 : CGGCCTCGGGGGCACCGGAGTATCTTGTCCCCTGggtattaaaaag : 100000

vulgar: SPP00000012_1.0 181 235 . SJYR01000661.1:subseq(831870,200000) 100161 99999 - 285 M 54 162
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01000661.1:subseq(831870,200000)	exonerate:protein2genome:local	gene	100000	100161	285	-	.	gene_id 1 ; sequence SPP00000012_1.0 ; gene_orientation .
SJYR01000661.1:subseq(831870,200000)	exonerate:protein2genome:local	cds	100000	100161	.	-	.	
SJYR01000661.1:subseq(831870,200000)	exonerate:protein2genome:local	exon	100000	100161	.	-	.	insertions 0 ; deletions 0
SJYR01000661.1:subseq(831870,200000)	exonerate:protein2genome:local	similarity	100000	100161	285	-	.	alignment_id 1 ; Query SPP00000012_1.0 ; Align 100162 182 162
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
