Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137251/Desktop/MsrA.fa -t genomic_SJYR01026337.1]
Hostname: [am30923-101066u]

C4 Alignment:
------------
         Query: SPP00000012_1.0  Protein  Methionine sulfoxide reductase A (MsrA)  Homo sapiens  Complete
        Target: SJYR01026337.1:subseq(0,1823) Kobus ellipsiprymnus isolate DFW-375 scaffold26375_size1828, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 285
   Query range: 181 -> 235
  Target range: 1691 -> 1529

  182 : ValLeuSerGluHisGlyPheGlyProIleThrThrAspIleArgGluGlyGlnThrPheTy :  202
        ||||||||||||||||||||||||  !|||||||||||||||||||||||||||||||||||
        ValLeuSerGluHisGlyPheGlyValIleThrThrAspIleArgGluGlyGlnThrPheTy
 1691 : GTTCTGTCGGAGCATGGTTTCGGCGTGATCACCACGGACATCCGGGAGGGACAGACCTTTTA : 1631

  203 : rTyrAlaGluAspTyrHisGlnGlnTyrLeuSerLysAsnProAsnGlyTyrCysGlyLeuG :  223
        |||||||||||||||||||||||||||||||||||||||||||:!!||||||||||||||||
        rTyrAlaGluAspTyrHisGlnGlnTyrLeuSerLysAsnProAspGlyTyrCysGlyLeuG
 1630 : CTATGCGGAAGATTACCACCAGCAGTACCTGAGCAAGAACCCCGACGGGTACTGCGGCCTCG : 1568

  224 : lyGlyThrGlyValSerCysProValGlyIleLysLys :  235
        |||||||||||||||||||||||:!!||||||||||||
        lyGlyThrGlyValSerCysProLeuGlyIleLysLys
 1567 : GGGGCACCGGAGTATCTTGTCCCCTGggtattaaaaag : 1530

vulgar: SPP00000012_1.0 181 235 . SJYR01026337.1:subseq(0,1823) 1691 1529 - 285 M 54 162
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01026337.1:subseq(0,1823)	exonerate:protein2genome:local	gene	1530	1691	285	-	.	gene_id 1 ; sequence SPP00000012_1.0 ; gene_orientation .
SJYR01026337.1:subseq(0,1823)	exonerate:protein2genome:local	cds	1530	1691	.	-	.	
SJYR01026337.1:subseq(0,1823)	exonerate:protein2genome:local	exon	1530	1691	.	-	.	insertions 0 ; deletions 0
SJYR01026337.1:subseq(0,1823)	exonerate:protein2genome:local	similarity	1530	1691	285	-	.	alignment_id 1 ; Query SPP00000012_1.0 ; Align 1692 182 162
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
