Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137251/Desktop/GPx8.fa -t genomic_SJYR01000057.1]
Hostname: [am30923-101066u]

C4 Alignment:
------------
         Query: SPP00000011_1.0  Protein  Glutathione peroxidase 8 (GPx8)  Homo sapiens  Complete
        Target: SJYR01000057.1:subseq(1004725,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold55_size1788061, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 965
   Query range: 0 -> 209
  Target range: 101077 -> 96713

      1 : MetGluProLeuAlaAlaTyrProLeuLysCysSerGlyProArgAlaLysValPheA :     20
          ||||||||||||.!!||||||||||||!:!||||||||||||!:!||||||!.!||||
          MetGluProLeuThrAlaTyrProLeuArgCysSerGlyProLysAlaLysAlaPheA
 101077 : ATGGAGCCTCTCACAGCCTATCCTTTGAGATGTTCAGGGCCCAAAGCAAAGGCATTTG : 101020

     21 : laValLeuLeuSerIleValLeuCysThrValThrLeuPheLeuLeuGlnLeuLysPh :     39
          ||||||||||||||!!:|||||||||||||||! !|||||||||||||||||||||||
          laValLeuLeuSerMetValLeuCysThrValMetLeuPheLeuLeuGlnLeuLysPh
 101019 : CAGTCTTGCTGTCTATGGTTCTGTGCACAGTAATGCTATTCCTCCTACAACTCAAATT : 100963

     40 : eLeuLysProLysIleAsnSerPheTyrAlaPheGluValLysAspAlaLysGlyArg :     58
          ||||||||||||||||||||||||||||...||||||||||||||||||!!.||||||
          eLeuLysProLysIleAsnSerPheTyrThrPheGluValLysAspAlaAsnGlyArg
 100962 : CCTAAAACCTAAAATCAatagcttttatacttttgaggTGAAAGATGCAAATGGAAGA : 100906

     59 : ThrValSerLeuGluLysTyrLysGlyLys  >>>> Target Intron 1 >>>>  :     69
          .!!|||||||||||||||!:!|||||||||            613 bp          
          AlaValSerLeuGluLysPheLysGlyLys++                         +
 100905 : GCGGTTTCTCTGGAAAAGTTTAAAGGCAAAgt.........................a : 100262

     70 :  ValSerLeuValValAsnValAlaSerAspCysGlnLeuThrAspArgAsnTyrLeu :     87
           |||:!!|||||||||||||||||||||||||||||||||||||||||||||||||||
          +ValAlaLeuValValAsnValAlaSerAspCysGlnLeuThrAspArgAsnTyrLeu
 100261 : gGTTGCACTAGTTGTAAACGTGGCTAGTGACTGCCAACTCACAGACAGAAATTACTTA : 100206

     88 : GlyLeuLysGluLeuHisLysGluPheGlyProSerHisPheSerValLeuAlaPheP :    107
          !.!|||:!!||||||||||||||||||||||||! !||||||||||||||||||||||
          AlaLeuGlnGluLeuHisLysGluPheGlyProPheHisPheSerValLeuAlaPheP
 100205 : GCACTGCAGGAACTGCACAAAGAGTTTGGACCATTCCACTTCAGCGTCTTGGCTTTTC : 100146

    108 : roCysAsnGlnPheGlyGluSerGluProArgProSerLysGluValGluSerPheAl :    126
          |||||||||||||||||||||||||||||||||||||||||||||||! !||||||||
          roCysAsnGlnPheGlyGluSerGluProArgProSerLysGluValValSerPheAl
 100145 : CATGCAATCAGTTTGGAGAATCGGAGCCCCGCCCGAGCAAGGAAGTAGTATCTTTTGC : 100089

    127 : aArgLysAsnTyrGlyValThrPheProIlePheHisLysIleLysIleLeuGlySer :    145
          ||||!!.|||!:!|||||||||||||||||||||||||||||||||||||||||||||
          aArgAsnAsnPheGlyValThrPheProIlePheHisLysIleLysIleLeuGlySer
 100088 : AAGAAATAACTTCGGAGTAACATTCCCCATCTTCCACAAGATTAAGATTCTAGGATCC : 100032

    146 : GluGlyGluProAlaPheArgPheLeuVal{A}  >>>> Target Intron 2 >> :    156
          |||!.!||||||||||||||||||||||||{|}           3124 bp       
          GluAlaGluProAlaPheArgPheLeuVal{A}++                       
 100031 : GAAGCAGAACCTGCATTTAGATTTCTTGTT{G}gt....................... :  99996

    157 : >>  {sp}SerSerLysLysGluProArgTrpAsnPheTrpLysTyrLeuValAsnPr :    173
              {||}||||||||||||||||||||||||||||||||||||||||||||||||||
            ++{sp}SerSerLysLysGluProArgTrpAsnPheTrpLysTyrLeuValAsnPr
  99995 : ..ag{AT}TCTTCAAAGAAGGAACCAAGGTGGAATTTTTGGAAGTATCTGGTCAACCC :  96824

    174 : oGluGlyGlnValValLysPheTrpLysProGluGluProIleGluValIleArgPro :    192
          |||||||||||||||||||! !|||!:!||||||||||||||||||||||||||||||
          oGluGlyGlnValValLysSerTrpArgProGluGluProIleGluValIleArgPro
  96823 : TGAAGGTCAAGTTGTAAAGTCCTGGAGGCCAGAGGAACCCATTGAAGTCATCAGGCCT :  96767

    193 : AspIleAlaAlaLeuValArgGlnValIleIleLysLysLysGluAspLeu :    209
          !!:||||||||||||:!!||||||:::||||||||||||||||||||||||
          GluIleAlaAlaLeuIleArgGlnMetIleIleLysLysLysGluAspLeu
  96766 : GAGATAGCAGCTCTGATTAGACAAAtgattataaaaaagaaagaggatctA :  96714

vulgar: SPP00000011_1.0 0 209 . SJYR01000057.1:subseq(1004725,200000) 101077 96713 - 965 M 68 204 5 0 2 I 0 609 3 0 2 M 87 261 S 0 1 5 0 2 I 0 3120 3 0 2 S 1 2 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01000057.1:subseq(1004725,200000)	exonerate:protein2genome:local	gene	96714	101077	965	-	.	gene_id 1 ; sequence SPP00000011_1.0 ; gene_orientation +
SJYR01000057.1:subseq(1004725,200000)	exonerate:protein2genome:local	cds	100874	101077	.	-	.	
SJYR01000057.1:subseq(1004725,200000)	exonerate:protein2genome:local	exon	100874	101077	.	-	.	insertions 0 ; deletions 0
SJYR01000057.1:subseq(1004725,200000)	exonerate:protein2genome:local	splice5	100872	100873	.	-	.	intron_id 1 ; splice_site "GT"
SJYR01000057.1:subseq(1004725,200000)	exonerate:protein2genome:local	intron	100261	100873	.	-	.	intron_id 1
SJYR01000057.1:subseq(1004725,200000)	exonerate:protein2genome:local	splice3	100261	100262	.	-	.	intron_id 0 ; splice_site "AG"
SJYR01000057.1:subseq(1004725,200000)	exonerate:protein2genome:local	cds	99999	100260	.	-	.	
SJYR01000057.1:subseq(1004725,200000)	exonerate:protein2genome:local	exon	99999	100260	.	-	.	insertions 0 ; deletions 0
SJYR01000057.1:subseq(1004725,200000)	exonerate:protein2genome:local	splice5	99997	99998	.	-	.	intron_id 2 ; splice_site "GT"
SJYR01000057.1:subseq(1004725,200000)	exonerate:protein2genome:local	intron	96875	99998	.	-	.	intron_id 2
SJYR01000057.1:subseq(1004725,200000)	exonerate:protein2genome:local	splice3	96875	96876	.	-	.	intron_id 1 ; splice_site "AG"
SJYR01000057.1:subseq(1004725,200000)	exonerate:protein2genome:local	cds	96714	96874	.	-	.	
SJYR01000057.1:subseq(1004725,200000)	exonerate:protein2genome:local	exon	96714	96874	.	-	.	insertions 0 ; deletions 0
SJYR01000057.1:subseq(1004725,200000)	exonerate:protein2genome:local	similarity	96714	101077	965	-	.	alignment_id 1 ; Query SPP00000011_1.0 ; Align 101078 1 204 ; Align 100261 69 261 ; Align 96873 157 159
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
