Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137251/Desktop/GPx4.fa -t genomic_SJYR01000491.1]
Hostname: [am30923-101066u]

C4 Alignment:
------------
         Query: SPP00000007_1.0  Protein  Glutathione peroxidase 4 (GPx4)  Homo sapiens  Complete
        Target: SJYR01000491.1:subseq(0,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold497_size1608354, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 563
   Query range: 3 -> 196
  Target range: 90381 -> 90955

     4 : GlyArgLeuCysArgLeuLeuLysProAlaLeuLeuCysGlyAlaLeuAlaAlaProGly :    23
         .!!|||||||||!.!|||||||||! !|||||||||||||||||||||      |||!.!
         SerArgLeuCysHisLeuLeuLysLeuAlaLeuLeuCysGlyAlaLeu------ProAla
 90382 : AGCCGTCTGTGCCACCTGCTAAAGCTGGCACTACTCTGTGGGGCCCTG------CCTGCT : 90433

    24 : -LeuAlaGlyThrMetCysAlaSerArgAspAspTrpArgCysAlaArgSerMetHisGl :    43
         #|||!.!.!!||||||! !|||||| !!|||:!!|||!.!!! |||!.!|||||| ! ||
         #LeuValSerThrMetTyrAlaSerCysAspAsnTrpHisTrpAlaHisSerMet***Gl
 90434 : CCTGGTCAGCACCATGTATGCATCCTGTGACAACTGGCACTGGGCACACTCCATGTAGGA : 90494

    44 : uPheSerAlaLysAspIleAspGlyHisMetValAsnLeuAspLysTyr--ArgGlyPhe :    62
         |||||||!.!|||:!!|||||||||  !||||||||||||||||||:!!##   |||!  
         uPheSerValLysAsnIleAspGlySerMetValAsnLeuAspLysHis##---Gly***
 90495 : ATTCTCTGTCAAGAACATTGACGGGAGCATGGTTAACCTGGACAAGCACCC---GGATAA : 90550

    63 : ValCysIleValThrAsnValAlaSerGlnUnkGlyLysThrGluValAsnTyrThrGln :    82
         |||||||||||||||!:!|||.!!||||||   |||||||||!!:|||||||||||||||
         ValCysIleValThrSerValThrSerGlnArgGlyLysThrAspValAsnTyrThrGln
 90551 : GTATGCATAGTCACCAGTGTGACCTCGCAAAGAGGCAAGACAGATGTAAACTATACTCAG : 90610

    83 : LeuValAsp-LeuHisAlaArgTyrAlaGluCysGlyLeuArgIleLeuAlaPheProCy :   102
         |||||||||#:!!:!!!.!!:!! !:!!||||||.!!|||!:!|||||||||||||||||
         LeuValAsp#MetAsnGlyGlnCysSerGluCysSerLeuGlnIleLeuAlaPheProCy
 90611 : CTGGTCGACAATGAACGGCCAATGCTCAGAGTGTAGCCTACAGATTCTGGCCTTCCCTTG : 90671

   103 : sAsnGlnPheGlyLysGlnGluProGlySerAsnGluGluIleLysGluPheAlaAlaGl :   122
         |||||||||| !!!:!||||||||||||||||||!  ||||||||||||||||||  !!.
         sAsnGlnPheArgArgGlnGluProGlySerAsnAlaGluIleLysGluPheAlaMetAl
 90672 : CAACCAGTTCAGGAGGCAGGAGCCAGGGAGCAATGCTGAGATCAAAGAGTTCGCCATGGC : 90731

   123 : yTyrAsnValLysPheAspMetPheSerLysIleCysValAsnGlyAspAspAlaHisPr :   142
         !        !!!.!!.! !! !|||||||||||||||:!!||||||||||||||||||||
         aThrAlaSerAsnLeuValLysPheSerLysIleCysMetAsnGlyAspAspAlaHisPr
 90732 : TACAGCATCAAATTTGGTTAAGTTCAGCAAGATCTGTATGAATGGGGATGATGCCCACCC : 90791

   143 : oLeuTrpLysTrpMetLysIleGlnProLysGlyLysGlyIleLeuGlyAsnAlaIleLy :   162
         ||||||||||!! |||||||||||||||||||||!:!.!!! !|||||||||||||||||
         oLeuTrpLysCysMetLysIleGlnProLysGlyArgSerThrLeuGlyAsnAlaIleLy
 90792 : TCTGTGGAAGTGCATGAAAATTCAGCCCAAGGGGAGGAGCACACTGGGAAATGCCATCAA : 90851

   163 : sTrpAsnPheThrLysPheLeuIleAspLysAsnGlyCysValValLysArgTyrGlyPr :   182
         ||||||||||||||||||||||||||||||||||.!!! !|||! !||| !!||||||||
         sTrpAsnPheThrLysPheLeuIleAspLysAsnSerTyrValGluLysTrpTyrGlyPr
 90852 : ATGGAACTTTACCAAGTTCCTCATTGACAAGAACAGCTATGTGGAGAAGTGGTATGGTCC : 90911

   183 : oMetGluGluProLeuValIleGluLysAspLeuProHisTyr :   196
         |||||||||| !!||||||||||||!!.:!!:!!|||  !|||
         oMetGluGluSerLeuValIleGluAsnAsnMetProCysTyr
 90912 : CATGGAAGAGTCCCTGGTGATAGAGAACAACATGCCATGTTAC : 90955

vulgar: SPP00000007_1.0 3 196 . SJYR01000491.1:subseq(0,200000) 90381 90955 + 563 M 16 48 G 2 0 M 2 6 F 0 1 M 36 108 F 0 2 G 1 0 M 25 75 F 0 1 M 111 333
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01000491.1:subseq(0,200000)	exonerate:protein2genome:local	gene	90382	90955	563	+	.	gene_id 1 ; sequence SPP00000007_1.0 ; gene_orientation .
SJYR01000491.1:subseq(0,200000)	exonerate:protein2genome:local	cds	90382	90955	.	+	.	
SJYR01000491.1:subseq(0,200000)	exonerate:protein2genome:local	exon	90382	90955	.	+	.	insertions 0 ; deletions 3 ; frameshifts 4
SJYR01000491.1:subseq(0,200000)	exonerate:protein2genome:local	similarity	90382	90955	563	+	.	alignment_id 1 ; Query SPP00000007_1.0 ; Align 90382 4 48 ; Align 90430 22 6 ; Align 90437 24 108 ; Align 90547 61 75 ; Align 90623 86 333
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
