------- SECIS element -- id:1 -- grade:A ----
 Chromosome = SJYR01000531.1:subseq_478884,100000_ Strand = + Positions = 841 - 914
 Found by:  Infernal (score=15.15) Covels (score=25.77)
 Stem2 length = 9   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -15.14

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...((([((---....([[((({(((({(((.....--........)))}))))})))]])......-...))])))...
 target  GGCGGCAUC---GCCAUGAAGGAGGGGCCCGAAGCC--CACGUGGGCGGACCUCCCUUGAGCCUGUC-UGAGGGGCCAGC
                         ****           ^^                        ****                   

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = SJYR01000531.1:subseq_478884,100000_ Strand = - Positions = 56288 - 56223
 Found by:  Infernal (score=14.7) Covels (score=14.09)
 Stem2 length = 8   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -10.4

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((((((---(...{[[[((({({((((......--.-----...))))})})))]]]}..--...)))))))...
 target  UCUGUUUCC---UUGAUGAAGGGACGUUCUUUAAGU--U-----CCCAGAAGGCUCUGGAUGA--CUCAGGGGGCUUA
                         ****            ^^                       ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = SJYR01000531.1:subseq_478884,100000_ Strand = + Positions = 19205 - 19279
 Found by:  Infernal (score=11.88) Covels (score=9.7)
 Stem2 length = 11   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -15.96

         ..(((((((.......((((((((((.(((((.................))))).))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC--cuuuuuggggcgggc-caggcCuGAUGuu-u-uuucaugaccggc
         ....({(((.--....{[[((((((((((((------.............))))))))))))]]}......-...)))})....
 target  UUCCCUCUGC--AGGGUGAGGGGUUUGGCCC------ACGUGAUCUCAAAGGGCUGAGCUCUGAUGGUCAA-GACCAGUGUUUC
                         ****                                         ****