Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff -q /home/u137251/Desktop/GPx2.fa -t genomic_SJYR01000393.1]
Hostname: [am30923-101066u]

C4 Alignment:
------------
         Query: SPP00000005_1.0  Protein  Glutathione peroxidase 2 (GPx2)  Homo sapiens  Complete
        Target: SJYR01000393.1:subseq(419615,200000) Kobus ellipsiprymnus isolate DFW-375 scaffold393_size1906508, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 977
   Query range: 0 -> 190
  Target range: 97287 -> 100350

      1 : MetAlaPheIleAlaLysSerPheTyrAspLeuSerAlaIleSerLeuAspGlyGluL :     20
          ||||||!:!|||||||||||||||||||||||||||||||||||||||||||||||||
          MetAlaTyrIleAlaLysSerPheTyrAspLeuSerAlaIleSerLeuAspGlyGluL
  97288 : ATGGCTTACATTGCCAAGTCCTTCTACGACCTCAGTGCTATCAGCCTTGATGGGGAGA :  97345

     21 : ysValAspPheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLe :     39
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ysValAspPheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLe
  97346 : AGGTAGATTTCAATACATTCCGAGGCAGGGCAGTGCTGATTGAGAATGTGGCCTCGCT :  97402

     40 : uUnkGlyThrThrThrArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPhePro :     58
          |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
          u***GlyThrThrThrArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPhePro
  97403 : TTGAGGCACAACCACCCGGGACTTCACCCAACTCAACGAGCTGCAATGCCGCTTCCCC :  97459

     59 : ArgArgLeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln  >>>> Tar :     75
          ||||||||||||||||||||||||||||||||||||||||||||||||          
          ArgArgLeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln++        
  97460 : AGGCGCCTGGTGGTTCTTGGCTTCCCTTGCAATCAATTTGGACATCAGgt........ :  97512

     76 : get Intron 1 >>>>  GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLys :     87
           2493 bp           |||||||||||||||||||||||||||||||||||||||
                           ++GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLys
  97513 : .................agGAGAACTGTCAGAATGAAGAGATCTTGAACAGCCTCAAG : 100039

     88 : TyrValArgProGlyGlyGlyTyrGlnProThrPheThrLeuValGlnLysCysGluV :    107
          |||||||||||||||||||||!:!||||||||||||||||||||||||||||||!!:|
          TyrValArgProGlyGlyGlyPheGlnProThrPheThrLeuValGlnLysCysAspV
 100040 : TATGTCCGCCCTGGAGGTGGATTCCAGCCCACCTTCACCCTTGTCCAGAAGTGTGATG : 100099

    108 : alAsnGlyGlnAsnGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrPr :    126
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          alAsnGlyGlnAsnGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrPr
 100100 : TGAATGGTCAGAATGAGCATCCTGTCTTCGCCTACCTGAAGGATAAGCTCCCCTACCC : 100156

    127 : oTyrAspAspProPheSerLeuMetThrAspProLysLeuIleIleTrpSerProVal :    145
          |||||||||||||||||||||||||||||||||||||!!!||||||||||||||||||
          oTyrAspAspProPheSerLeuMetThrAspProLysPheIleIleTrpSerProVal
 100157 : TTATGACGACCCGTTTTCCCTCATGACCGATCCCAAGTTCATCATCTGGAGCCCCGTG : 100213

    146 : ArgArgSerAspValAlaTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluP :    165
          |||||||||||||||:!!||||||||||||||||||||||||||||||||||||||||
          ArgArgSerAspValSerTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluP
 100214 : CGCCGCTCAGATGTGTCCTGGAACTTTGAGAAGTTCCTCATTGGCCCGGAAGGGGAGC : 100273

    166 : roPheArgArgTyrSerArgThrPheProThrIleAsnIleGluProAspIleLysAr :    184
          ||||||||||||||||||||!.!|||! !|||||||||||||||||||||||||||||
          roPheArgArgTyrSerArgAsnPheGlnThrIleAsnIleGluProAspIleLysAr
 100274 : CCTTCCGCCGCTACAGCCGCAACTTCCAAACCATCAACATCGAGCCTGACATCAAGCG : 100330

    185 : gLeuLeuLysValAlaIle :    190
          |||||||||||||||||||
          gLeuLeuLysValAlaIle
 100331 : CCTCCTCAAAGTTGCCATA : 100350

vulgar: SPP00000005_1.0 0 190 . SJYR01000393.1:subseq(419615,200000) 97287 100350 + 977 M 74 222 5 0 2 I 0 2489 3 0 2 M 116 348
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
SJYR01000393.1:subseq(419615,200000)	exonerate:protein2genome:local	gene	97288	100350	977	+	.	gene_id 1 ; sequence SPP00000005_1.0 ; gene_orientation +
SJYR01000393.1:subseq(419615,200000)	exonerate:protein2genome:local	cds	97288	97509	.	+	.	
SJYR01000393.1:subseq(419615,200000)	exonerate:protein2genome:local	exon	97288	97509	.	+	.	insertions 0 ; deletions 0
SJYR01000393.1:subseq(419615,200000)	exonerate:protein2genome:local	splice5	97510	97511	.	+	.	intron_id 1 ; splice_site "GT"
SJYR01000393.1:subseq(419615,200000)	exonerate:protein2genome:local	intron	97510	100002	.	+	.	intron_id 1
SJYR01000393.1:subseq(419615,200000)	exonerate:protein2genome:local	splice3	100001	100002	.	+	.	intron_id 0 ; splice_site "AG"
SJYR01000393.1:subseq(419615,200000)	exonerate:protein2genome:local	cds	100003	100350	.	+	.	
SJYR01000393.1:subseq(419615,200000)	exonerate:protein2genome:local	exon	100003	100350	.	+	.	insertions 0 ; deletions 0
SJYR01000393.1:subseq(419615,200000)	exonerate:protein2genome:local	similarity	97288	100350	977	+	.	alignment_id 1 ; Query SPP00000005_1.0 ; Align 97288 1 222 ; Align 100003 75 348
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
