Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff --exhaustive yes -q query27 -t q_subseq] Hostname: [am30741-101093u] C4 Alignment: ------------ Query: SPP00000081_1.0 # Protein # Thioredoxin reductase 3 (TR3) # Mus musculus # Complete Target: PVKD010012172.1:subseq(1,44864) Cricetomys gambianus isolate US082 CriGam_scaffold_24329, whole genome shotgun sequence Model: protein2genome:local Raw score: 2908 Query range: 0 -> 615 Target range: 5980 -> 35538 1 : MetSerSerProProGlyArgArgAlaArgLeuAlaSerProGlyThrSerArgProSer : 20 |||!!!|||||||||||||||||||||||||||:!!||||||||||||||||||! !||| MetThrSerProProGlyArgArgAlaArgLeuSerSerProGlyThrSerArgGlnSer 5981 : ATGACGTCGCCACCCGGCCGCCGCGCCCGCCTGTCGTCTCCTGGGACCAGCCGCCAGTCC : 6038 21 : SerGluAlaArgGluGluLeuArgArgArgLeuArgAspLeuIleGluGlyAsnArgVal : 40 !!!|||||||||||||||:!!||||||||||||||||||||||||||||||||||||||| ThrGluAlaArgGluGluMetArgArgArgLeuArgAspLeuIleGluGlyAsnArgVal 6039 : ACCGAGGCCCGCGAGGAGATGCGGCGCCGCCTGCGGGACCTCATCGAGGGCAATCGGGTG : 6098 41 : MetIlePheSerLysSerTyrCysProHisSerThrArg >>>> Target Intron : 54 ||||||||||||||||||||||||||||||||||||||| 6402 bp MetIlePheSerLysSerTyrCysProHisSerThrArg++ 6099 : ATGATCTTCAGCAAGAGCTACTGTCCACACAGCACGCGGgt................... : 6142 55 : 1 >>>> ValLysGluLeuPheSerSerLeuGlyValValTyrAsnIleLeuGluLeuA : 71 ||||||||||||||||||||||||||||||! !||||||||||||||||||| ++ValLysGluLeuPheSerSerLeuGlyValAspTyrAsnIleLeuGluLeuA 6143 : ......agGTTAAGGAACTCTTTTCATCCTTGGGAGTGGACTATAACATCCTGGAACTTG : 12593 72 : spGlnVal{A} >>>> Target Intron 2 >>>> {sp}AspGlyAlaSerValG : 80 ||||||||{|} 942 bp {||}|||||||||!:!|||| spGlnVal{A}++ ++{sp}AspGlyAlaAsnValG 12594 : ATCAAGTT{G}gt.........................ag{AT}GATGGGGCCAATGTTC : 13562 81 : lnGluValLeuThrGluIleSerAsnGlnLysThrValProAsnIlePheValAsnLysV : 100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| lnGluValLeuThrGluIleSerAsnGlnLysThrValProAsnIlePheValAsnLysV 13563 : AGGAAGTCCTGACAGAAATCAGCAACCAGAAAACAGTGCCTAATATCTTTGTGAATAAAG : 13622 101 : alHisValGlyGlyCysAspArgThrPheGln >>>> Target Intron 3 >>>> : 111 |||||||||||||||||||||||||||||||| 2975 bp alHisValGlyGlyCysAspArgThrPheGln++ + 13623 : TGCATGTGGGTGGATGCGACCGAACTTTCCAGgt.........................a : 16628 112 : AlaHisGlnAsnGlyLeuLeuGlnLysLeuLeuGlnAspAspSerAlaHisAspTyrAs : 130 ||||||||||||||||||||||||||||||||||||!!:|||||||||||||||||||| +AlaHisGlnAsnGlyLeuLeuGlnLysLeuLeuGlnGluAspSerAlaHisAspTyrAs 16629 : gGCACATCAGAATGGTTTACTGCAGAAGCTCCTCCAGGAAGACTCTGCTCACGATTACGA : 16687 131 : pLeuIleIleIleGlyGlyGlySerGlyGlyLeuSerCysAlaLys >>>> Target : 146 |||||||:!!|||||||||||||||||||||||||||||||||||| 19 pLeuIleValIleGlyGlyGlySerGlyGlyLeuSerCysAlaLys++ 16688 : TCTCATCGTCATCGGAGGGGGCTCTGGCGGCCTCTCTTGTGCGAAGgt............ : 16737 147 : Intron 4 >>>> GluAlaAlaAsnLeuGlyLysLysValMetValLeuAspPheVal : 160 7 bp ||||||||||||||||||||||||||||||||||||||||||||| ++GluAlaAlaAsnLeuGlyLysLysValMetValLeuAspPheVal 16738 : .............agGAAGCTGCCAACTTGGGAAAGAAGGTCATGGTGCTAGACTTCGTG : 16974 161 : ValProSerProGlnGlyThrThrTrp{G} >>>> Target Intron 5 >>>> { : 170 |||||||||||||||||||||||||||{|} 1456 bp { ValProSerProGlnGlyThrThrTrp{G}++ ++{ 16975 : GTCCCATCGCCTCAGGGCACAACCTGG{G}gt.........................ag{ : 18461 171 : ly}LeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnAla : 189 ||}||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ly}LeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnAla 18462 : gc}cttggtGGCACCTGTGTAAATGTGGGCTGTATTCCTAAGAAGCTGATGCACCAGGCA : 18517 190 : AlaLeuLeuGlyHisAlaLeuGlnAspAlaLysLysTyrGlyTrpGluTyrAsnGlnGln : 209 ||||||||||||!!.||||||||||||:!!||||||!:!||||||||||||||||||||| AlaLeuLeuGlyGlnAlaLeuGlnAspSerLysLysPheGlyTrpGluTyrAsnGlnGln 18518 : GCCCTCCTGGGGCAGGCCTTGCAGGACTCGAAGAAATTTGGCTGGGAGTATAACCAACAG : 18577 210 : {V} >>>> Target Intron 6 >>>> {al}LysHisAsnTrpGluAlaMetThr : 218 {|} 4185 bp {||}||||||||||||!!:!.!|||! ! {V}++ ++{al}LysHisAsnTrpAspValMetMet 18578 : {G}gt.........................ag{TG}AAACACAACTGGGATGTAATGATG : 22789 219 : GluAlaIleGlnSerHisIleGlySerLeuAsnTrpGlyTyrArgValThrLeuArgGlu : 238 ||||||||||||!:!||||||.!!|||||||||||||||||||||:!!|||||||||||| GluAlaIleGlnAsnHisIleSerSerLeuAsnTrpGlyTyrArgLeuThrLeuArgGlu 22790 : GAAGCGATTCAGAACCACATCAGCTCCTTGAACTGGGGCTACAGGCTGACCCTTCGGGAG : 22849 239 : LysGlyValThrTyrValAsnSerPheGlyGluPheValAspLeuHisLysIleLys > : 258 |||||||||||||||:!!||||||!:!||||||||||||!!:||||||||||||||| LysGlyValThrTyrIleAsnSerTyrGlyGluPheValGluLeuHisLysIleLys++ 22850 : AAAGGCGTGACCTACATCAACTCCTACGGGGAGTTTGTTGAGCTGCATAAAATAAAGgt. : 22911 259 : >>> Target Intron 7 >>>> AlaThrAsnLysLysGlyGlnGluThrPheTyrT : 269 1456 bp |||||||||||||||||||||||||||||||||| ++AlaThrAsnLysLysGlyGlnGluThrPheTyrT 22912 : ........................agGCAACCAATAAGAAAGGACAGGAAACTTTCTATA : 24398 270 : hrAlaSerLysPheValIleAlaThrGlyGluArgProArgTyrLeuGlyIleGlnGlyA : 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| hrAlaSerLysPheValIleAlaThrGlyGluArgProArgTyrLeuGlyIleGlnGlyA 24399 : CTGCTTCGAAGTTTGTCATAGCCACAGGTGAAAGGCCACGCTACTTGGGAATCCAAGGAG : 24458 290 : spLysGluTyrCysIleThr{Se} >>>> Target Intron 8 >>>> {r}AspA : 298 ||||||||!:!|||||||||{||} 357 bp {|}|||| spLysGluPheCysIleThr{Se}++ ++{r}AspA 24459 : ATAAGGAATTCTGTATTACA{AG}gt.........................ag{T}GATG : 24842 299 : spLeuPheSerLeuProTyrCysProGlyCysThrLeuValValGlyAlaSerTyrValG : 318 ||||||||||||||||||||||||||||| !!|||||||||||||||||||||||||||| spLeuPheSerLeuProTyrCysProGlyArgThrLeuValValGlyAlaSerTyrValG 24843 : ACCTATTCTCTCTGCCTTACTGCCCGGGCCGCACGTTAGTAGTGGGTGCCTCGTACGTTG : 24902 319 : lyLeuGluCysAlaGlyPheLeuAlaGlyLeuGlyLeuAspValThrValMetValArgS : 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| lyLeuGluCysAlaGlyPheLeuAlaGlyLeuGlyLeuAspValThrValMetValArgS 24903 : GCTTGGAATGTGCAGGGTTTCTGGCTGGCTTGGGATTAGACGTGACAGTTATGGTGCGCT : 24962 339 : erValLeuLeuArgGlyPheAspGlnGluMetAlaGluLysValGlySerTyrLeuGluG : 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||:!!|||| erValLeuLeuArgGlyPheAspGlnGluMetAlaGluLysValGlySerTyrMetGluG 24963 : CCGTCCTTCTTCGTGGCTTTGATCAAGAAATGGCTGAGAAGGTGGGATCCTATATGGAAC : 25022 359 : lnGlnGlyValLysPheGlnArgLysPheThrProIleLeu >>>> Target Intro : 372 |||||||||||||||||||||||||||||! !|||:!: ! 1184 bp lnGlnGlyValLysPheGlnArgLysPheIleProValThr+- 25023 : AACAAGGTGTCAAGTTCCAAAGGAAGTTCATCCCTGTGACGgc................. : 25066 373 : n 9 >>>> ValGlnGlnLeuGluLysGlyLeuProGlyLysLeuLysValValAlaLy : 388 :!!||||||||||||||||||! !||||||! !||||||||||||||||| ++IleGlnGlnLeuGluLysGlySerProGlyIleLeuLysValValAlaLy 25067 : ........agATTCAACAACTGGAGAAAGGCTCGCCTGGAATATTGAAAGTCGTGGCTAA : 26296 389 : sSerThrGluGlyProGluThrValGluGlyIleTyrAsnThr >>>> Target Int : 403 |||||||||||||! !||||||:!!||||||! !||||||||| 3503 sSerThrGluGlyGlnGluThrIleGluGlyLysTyrAsnThr++ 26297 : GTCAACTGAAGGACAGGAGACCATTGAAGGAAAATACAATACGgt............... : 26343 404 : ron 10 >>>> ValLeuLeuAlaIleGlyArgAspSerCysThrArgLysIleGlyLe : 418 bp |||||||||||||||||||||||||||||||||!:!||||||||||| ++ValLeuLeuAlaIleGlyArgAspSerCysThrLysLysIleGlyLe 26344 : ...........agGTTTTGTTAGCAATTGGTCGTGACTCCTGCACAAAGAAAATAGGGCT : 29889 419 : uGluLysIleGlyValLysIleAsnGlu{Ly} >>>> Target Intron 11 >>>> : 428 |!!:||||||||||||||||||||||||{||} 642 bp uAspLysIleGlyValLysIleAsnGlu{Ly}++ 29890 : GGACAAGATCGGGGTCAAGATCAACGAG{AA}gt.......................... : 29923 429 : {s}AsnGlyLysIleProValAsnAspValGluGlnThrAsnValProHisValTyrA : 447 {|}||||||||||||||||||||||||||||||||||||||||||||||||||||||| ++{s}AsnGlyLysIleProValAsnAspValGluGlnThrAsnValProHisValTyrA 29924 : ag{G}AATGGCAAAATACCTGTAAATGACGTGGAACAGACCAACGTGCCTCATGTCTATG : 30618 448 : laIleGlyAspIleLeuAspGlyLysProGluLeuThrProValAlaIleGlnAlaGlyL : 467 |||||||||||||||||!!:|||||||||||||||||||||||||||||||||||||||| laIleGlyAspIleLeuGluGlyLysProGluLeuThrProValAlaIleGlnAlaGlyL 30619 : CTATTGGGGATATACTGGAGGGCAAACCAGAGCTCACACCTGTTGCCATACAGGCAGGCA : 30678 468 : ysLeuLeuAlaArgArgLeuPheGlyValSerLeuGluLys >>>> Target Intro : 481 ||||||||||||||||||||||||||:!!|||||||||||| 2171 bp ysLeuLeuAlaArgArgLeuPheGlyIleSerLeuGluLys++ 30679 : AGCTGCTAGCTCGAAGACTCTTTGGGATTTCTTTGGAAAAGgt................. : 30722 482 : n 12 >>>> CysAspTyrIleAsnIleProThrThrValPheThrProLeuGluTyrG : 497 |||||||||:!!|||:!!||||||||||||||||||||||||||||||| ++CysAspTyrValAsnValProThrThrValPheThrProLeuGluTyrG 30723 : .........agTGCGATTACGTTAACGTCCCAACAACAGTGTTCACACCTCTGGAATATG : 32939 498 : lyCysCysGlyLeuSerGluGluLysAlaIleGluMetTyrLysLysGluAsnLeuGlu : 517 |||||||||||:!!|||||||||||||||||||||:!!:!!|||||||||||||||||| lyCysCysGlyMetSerGluGluLysAlaIleGluValHisLysLysGluAsnLeuGlu+ 32940 : GCTGCTGTGGGATGTCTGAAGAGAAAGCCATTGAAGTGCATAAAAAAGAGAATCTGGAAg : 32999 518 : >>>> Target Intron 13 >>>> ValTyrHisThrLeuPheTrpProLeuGluT : 527 705 bp ||||||||||||||||||||||||||||||| + ++ValTyrHisThrLeuPheTrpProLeuGluT 33000 : t..........................agGTGTATCACACCTTGTTCTGGCCTCTTGAGT : 33734 528 : rpThrValAlaGlyArgAspAsnAsnThrCysTyrAlaLysIleIleCysAsnLysPheA : 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| rpThrValAlaGlyArgAspAsnAsnThrCysTyrAlaLysIleIleCysAsnLysPheA 33735 : GGACAGTCGCTGGCAGAGACAACAACACCTGTTATGCAAAGATAATCTGCAACAAATTCG : 33794 548 : spAsn >>>> Target Intron 14 >>>> GluArgValValGlyPheHisLeuL : 557 ||!:! 998 bp !!:|||||||||||||||||||||| spSer++ ++AspArgValValGlyPheHisLeuL 33795 : ACAGCgt..........................agGACCGCGTGGTGGGGTTTCACCTTC : 34822 558 : euGlyProAsnAlaGlyGluIleThrGlnGlyPheAlaAlaAlaMetLysCysGlyLeuT : 577 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| euGlyProAsnAlaGlyGluIleThrGlnGlyPheAlaAlaAlaMetLysCysGlyLeuT 34823 : TGGGGCCAAATGCTGGGGAAATCACACAGGGCTTTGCAGCTGCAATGAAATGTGGACTCA : 34882 578 : hrLysGlnLeuLeuAspAspThrIleGlyIleHisProThrCysGlyGlu >>>> Tar : 594 ||||||||||||||:!!||||||||||||||||||||||||||||||||| hrLysGlnLeuLeuAsnAspThrIleGlyIleHisProThrCysGlyGlu++ 34883 : CAAAGCAGCTACTGAATGACACCATTGGAATCCACCCCACGTGTGGTGAGgt........ : 34935 595 : get Intron 15 >>>> ValPheThrThrLeuGluIleThrLysSerSerGlyLeuA : 607 540 bp |||||||||||||||||||||||||||||||||||||||| ++ValPheThrThrLeuGluIleThrLysSerSerGlyLeuA 34936 : ..................agGTATTTACGACGTTGGAAATCACAAAGTCTTCAGGGCTGG : 35512 608 : spIleThrGlnLysGlyCysUnkGly : 615 |||||||||||||||||||| ||| spIleThrGlnLysGlyCys***Gly 35513 : ACATCACTCAGAAAGGCTGCTGAGGC : 35538 vulgar: SPP00000081_1.0 0 615 . PVKD010012172.1:subseq(1,44864) 5980 35538 + 2908 M 53 159 5 0 2 I 0 6398 3 0 2 M 20 60 S 0 1 5 0 2 I 0 938 3 0 2 S 1 2 M 36 108 5 0 2 I 0 2971 3 0 2 M 35 105 5 0 2 I 0 193 3 0 2 M 24 72 S 0 1 5 0 2 I 0 1452 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 4181 3 0 2 S 1 2 M 47 141 5 0 2 I 0 1452 3 0 2 M 38 114 S 0 2 5 0 2 I 0 353 3 0 2 S 1 1 M 75 225 5 0 2 I 0 1180 3 0 2 M 31 93 5 0 2 I 0 3499 3 0 2 M 25 75 S 0 2 5 0 2 I 0 638 3 0 2 S 1 1 M 52 156 5 0 2 I 0 2167 3 0 2 M 36 108 5 0 2 I 0 701 3 0 2 M 32 96 5 0 2 I 0 994 3 0 2 M 45 135 5 0 2 I 0 536 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2019-11-20 ##type DNA # # # seqname source feature start end score strand frame attributes # PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local gene 5981 35538 2908 + . gene_id 1 ; sequence SPP00000081_1.0 ; gene_orientation + PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local cds 5981 6139 . + . PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local exon 5981 6139 . + . insertions 0 ; deletions 0 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice5 6140 6141 . + . intron_id 1 ; splice_site "GT" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local intron 6140 12541 . + . intron_id 1 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice3 12540 12541 . + . intron_id 0 ; splice_site "AG" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local cds 12542 12602 . + . PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local exon 12542 12602 . + . insertions 0 ; deletions 0 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice5 12603 12604 . + . intron_id 2 ; splice_site "GT" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local intron 12603 13544 . + . intron_id 2 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice3 13543 13544 . + . intron_id 1 ; splice_site "AG" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local cds 13545 13654 . + . PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local exon 13545 13654 . + . insertions 0 ; deletions 0 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice5 13655 13656 . + . intron_id 3 ; splice_site "GT" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local intron 13655 16629 . + . intron_id 3 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice3 16628 16629 . + . intron_id 2 ; splice_site "AG" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local cds 16630 16734 . + . PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local exon 16630 16734 . + . insertions 0 ; deletions 0 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice5 16735 16736 . + . intron_id 4 ; splice_site "GT" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local intron 16735 16931 . + . intron_id 4 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice3 16930 16931 . + . intron_id 3 ; splice_site "AG" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local cds 16932 17004 . + . PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local exon 16932 17004 . + . insertions 0 ; deletions 0 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice5 17005 17006 . + . intron_id 5 ; splice_site "GT" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local intron 17005 18460 . + . intron_id 5 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice3 18459 18460 . + . intron_id 4 ; splice_site "ag" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local cds 18461 18580 . + . PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local exon 18461 18580 . + . insertions 0 ; deletions 0 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice5 18581 18582 . + . intron_id 6 ; splice_site "GT" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local intron 18581 22765 . + . intron_id 6 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice3 22764 22765 . + . intron_id 5 ; splice_site "AG" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local cds 22766 22908 . + . PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local exon 22766 22908 . + . insertions 0 ; deletions 0 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice5 22909 22910 . + . intron_id 7 ; splice_site "GT" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local intron 22909 24364 . + . intron_id 7 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice3 24363 24364 . + . intron_id 6 ; splice_site "aG" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local cds 24365 24480 . + . PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local exon 24365 24480 . + . insertions 0 ; deletions 0 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice5 24481 24482 . + . intron_id 8 ; splice_site "GT" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local intron 24481 24837 . + . intron_id 8 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice3 24836 24837 . + . intron_id 7 ; splice_site "AG" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local cds 24838 25063 . + . PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local exon 24838 25063 . + . insertions 0 ; deletions 0 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice5 25064 25065 . + . intron_id 9 ; splice_site "GC" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local intron 25064 26247 . + . intron_id 9 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice3 26246 26247 . + . intron_id 8 ; splice_site "AG" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local cds 26248 26340 . + . PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local exon 26248 26340 . + . insertions 0 ; deletions 0 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice5 26341 26342 . + . intron_id 10 ; splice_site "GT" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local intron 26341 29843 . + . intron_id 10 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice3 29842 29843 . + . intron_id 9 ; splice_site "AG" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local cds 29844 29920 . + . PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local exon 29844 29920 . + . insertions 0 ; deletions 0 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice5 29921 29922 . + . intron_id 11 ; splice_site "GT" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local intron 29921 30562 . + . intron_id 11 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice3 30561 30562 . + . intron_id 10 ; splice_site "AG" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local cds 30563 30719 . + . PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local exon 30563 30719 . + . insertions 0 ; deletions 0 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice5 30720 30721 . + . intron_id 12 ; splice_site "GT" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local intron 30720 32890 . + . intron_id 12 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice3 32889 32890 . + . intron_id 11 ; splice_site "AG" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local cds 32891 32998 . + . PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local exon 32891 32998 . + . insertions 0 ; deletions 0 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice5 32999 33000 . + . intron_id 13 ; splice_site "GT" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local intron 32999 33703 . + . intron_id 13 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice3 33702 33703 . + . intron_id 12 ; splice_site "AG" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local cds 33704 33799 . + . PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local exon 33704 33799 . + . insertions 0 ; deletions 0 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice5 33800 33801 . + . intron_id 14 ; splice_site "GT" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local intron 33800 34797 . + . intron_id 14 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice3 34796 34797 . + . intron_id 13 ; splice_site "AG" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local cds 34798 34932 . + . PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local exon 34798 34932 . + . insertions 0 ; deletions 0 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice5 34933 34934 . + . intron_id 15 ; splice_site "GT" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local intron 34933 35472 . + . intron_id 15 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local splice3 35471 35472 . + . intron_id 14 ; splice_site "AG" PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local cds 35473 35538 . + . PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local exon 35473 35538 . + . insertions 0 ; deletions 0 PVKD010012172.1:subseq(1,44864) exonerate:protein2genome:local similarity 5981 35538 2908 + . alignment_id 1 ; Query SPP00000081_1.0 ; Align 5981 1 159 ; Align 12542 54 60 ; Align 13547 75 108 ; Align 16630 111 105 ; Align 16932 146 72 ; Align 18463 171 117 ; Align 22768 211 141 ; Align 24365 258 114 ; Align 24839 297 225 ; Align 26248 372 93 ; Align 29844 403 75 ; Align 30564 429 156 ; Align 32891 481 108 ; Align 33704 517 96 ; Align 34798 549 135 ; Align 35473 594 66 # --- END OF GFF DUMP --- # -- completed exonerate analysis