Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff --exhaustive yes -q query24 -t q_subseq]
Hostname: [am30741-101093u]

C4 Alignment:
------------
         Query: SPP00000118_1.0 # Protein # Selenoprotein W2 (SelW2) # Mus musculus # Complete
        Target: PVKD010009993.1:subseq(1,58315) Cricetomys gambianus isolate US082 CriGam_scaffold_19974, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 544
   Query range: 0 -> 115
  Target range: 46238 -> 47120

     1 : MetSerGlyGluProAlaProValSerValValProProProGlyGluValGluAlaGly :    20
         |||||||||||||||!.!! !|||||||||||||||||||||||||||||||||||||||
         MetSerGlyGluProGlyGlnValSerValValProProProGlyGluValGluAlaGly
 46239 : ATGAGTGGGGAGCCGGGGCAGGTGTCCGTAGTGCCCCCTCCCGGGGAGGTGGAAGCGGGC : 46296

    21 : SerGlyValHisIleValValGluTyr{Cy}  >>>> Target Intron 1 >>>>   :    30
         |||||||||!.!|||||||||||||||{||}            113 bp           
         SerGlyValArgIleValValGluTyr{Cy}++                         ++
 46297 : AGTGGAGTCCGCATCGTGGTGGAGTAC{TG}gt.........................ag : 46439

    31 : {s}LysProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaValLysGluGlu :    49
         {|}:!!||||||||||||||||||||||||||||||||||||||||||||||||||||||
         {s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaValLysGluGlu
 46440 : {T}GAGCCCTGCGGCTTCGAGGCGACCTACCTGGAGCTGGCGAGCGCCGTGAAGGAGGAA : 46496

    50 : TyrProGlyIleGluIleGluSerArgLeuGlyGlyThr{G}  >>>> Target Intr :    63
         |||||||||||||||||||||||||||! !|||||||||{|}            340 bp
         TyrProGlyIleGluIleGluSerArgHisGlyGlyThr{G}++                
 46497 : TATCCGGGCATCGAAATTGAGTCGCGACACGGAGGGACA{G}gt................ : 46541

    64 : on 2 >>>>  {ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPheSerLysLeu :    78
                    {||}|||||||||||||||||||||||||||||||||||||||||||||
                  ++{ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPheSerLysLeu
 46542 : .........ag{GG}GCCTTTGAGATTGAGATCAATGGACAGCTGGTGTTCTCCAAGCTG : 46923

    79 : GluAsnGlyGlyPheProTyrGluLysAsp  >>>> Target Intron 3 >>>>  L :    89
         ||||||||||||||||||||||||||||||            84 bp            |
         GluAsnGlyGlyPheProTyrGluLysAsp++                         ++L
 46924 : GAGAATGGGGGCTTTCCTTATGAGAAAGACgt.........................agC : 47040

    90 : euMetGluAlaIleArgArgAlaSerAsnGlyGluProValGluLysIleThrAsnSerA :   109
         ||!!:|||||||||||||||||||||||||||||||||:!!|||||||||||||||||||
         euIleGluAlaIleArgArgAlaSerAsnGlyGluProLeuGluLysIleThrAsnSerA
 47041 : TAATCGAGGCCATCCGAAGAGCCAGCAATGGAGAACCCTTAGAAAAGATCACCAACAGCC : 47100

   110 : rgProProCysValIleLeu :   115
         ||||||||||||||||||||
         rgProProCysValIleLeu
 47101 : GGCCTCCCTGTGTCATCCTG : 47120

vulgar: SPP00000118_1.0 0 115 . PVKD010009993.1:subseq(1,58315) 46238 47120 + 544 M 29 87 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 32 96 S 0 1 5 0 2 I 0 336 3 0 2 S 1 2 M 25 75 5 0 2 I 0 80 3 0 2 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	gene	46239	47120	544	+	.	gene_id 1 ; sequence SPP00000118_1.0 ; gene_orientation +
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	cds	46239	46327	.	+	.	
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	exon	46239	46327	.	+	.	insertions 0 ; deletions 0
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	splice5	46328	46329	.	+	.	intron_id 1 ; splice_site "GT"
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	intron	46328	46440	.	+	.	intron_id 1
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	splice3	46439	46440	.	+	.	intron_id 0 ; splice_site "AG"
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	cds	46441	46538	.	+	.	
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	exon	46441	46538	.	+	.	insertions 0 ; deletions 0
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	splice5	46539	46540	.	+	.	intron_id 2 ; splice_site "GT"
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	intron	46539	46878	.	+	.	intron_id 2
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	splice3	46877	46878	.	+	.	intron_id 1 ; splice_site "AG"
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	cds	46879	46955	.	+	.	
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	exon	46879	46955	.	+	.	insertions 0 ; deletions 0
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	splice5	46956	46957	.	+	.	intron_id 3 ; splice_site "GT"
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	intron	46956	47039	.	+	.	intron_id 3
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	splice3	47038	47039	.	+	.	intron_id 2 ; splice_site "AG"
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	cds	47040	47120	.	+	.	
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	exon	47040	47120	.	+	.	insertions 0 ; deletions 0
PVKD010009993.1:subseq(1,58315)	exonerate:protein2genome:local	similarity	46239	47120	544	+	.	alignment_id 1 ; Query SPP00000118_1.0 ; Align 46239 1 87 ; Align 46442 31 96 ; Align 46881 64 75 ; Align 47040 89 81
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis