Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff --exhaustive yes -q query23 -t q_subseq]
Hostname: [am30751-101042u]

C4 Alignment:
------------
         Query: SPP00000117_1.0 # Protein # Selenoprotein W1 (SelW1) # Mus musculus # Complete
        Target: PVKD010002365.1:subseq(1,185888) Cricetomys gambianus isolate US082 CriGam_scaffold_4727, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 170
   Query range: 3 -> 68
  Target range: 85410 -> 85888

     4 : ValGluProGlnGluTrpCysLeuProAspMetGluLeuTrpProArgAspLeuThr{Gl :    23
         :!!|||  !:!!||||||||||||||||||||||||||||||||||||!!:||||||{||
         IleGluGlyGluGluTrpCysLeuProAspMetGluLeuTrpProArgGluLeuThr{Gl
 85411 : ATTGAAGGGGAAGAATGGTGTTTGCCAGACATGGAACTCTGGCCCAGAGAGCTCACA{GG : 85468

    24 : }  >>>> Target Intron 1 >>>>  {y}LeuGlyMetValArgGluLysAsnPhe :    32
         }            187 bp           {|}! ! !!|||||||||||||||||||||
         }-+                         ++{y}HisTrpMetValArgGluLysAsnPhe
 85469 : }at.........................ag{C}CACTGGATGGTCAGGGAGAAAAACTTC : 85682

    33 : SerThrLeuThrProLeuThrLeuArgArgAspLeu  >>>> Target Intron 2 > :    45
         |||||||||:!!||||||||||||! !!:!! !|||            96 bp       
         SerThrLeuSerProLeuThrLeuProLysGlyLeu-+                      
 85683 : TCCACCTTGTCTCCCCTGACTCTTCCCAAAGGTCTTat...................... : 85723

    46 : >>>  IleIleIleSerLeuProThrLeuAsnSerTrpThrHisPheLeuAlaValLeuL :    63
                    ! !!!!|||! !|||||||||!!!! !||||||||||||||||||! !|
            ++SerGlyLysCysLeuLeuThrLeuAsn******ThrHisPheLeuAlaValProL
 85724 : ...agTCGGGGAAATGTCTGCTAACCCTGAACTGATAGACCCATTTCCTGGCAGTTCCGA : 85871

    64 : ysMetLysArgLeuMet :    68
         |||||||||||||||||
         ysMetLysArgLeuMet
 85872 : AGATGAAGAGATTGATG : 85888

vulgar: SPP00000117_1.0 3 68 . PVKD010002365.1:subseq(1,185888) 85410 85888 + 170 M 19 57 S 0 2 5 0 2 I 0 183 3 0 2 S 1 1 M 21 63 5 0 2 I 0 92 3 0 2 M 24 72
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
PVKD010002365.1:subseq(1,185888)	exonerate:protein2genome:local	gene	85411	85888	170	+	.	gene_id 1 ; sequence SPP00000117_1.0 ; gene_orientation +
PVKD010002365.1:subseq(1,185888)	exonerate:protein2genome:local	cds	85411	85469	.	+	.	
PVKD010002365.1:subseq(1,185888)	exonerate:protein2genome:local	exon	85411	85469	.	+	.	insertions 0 ; deletions 0
PVKD010002365.1:subseq(1,185888)	exonerate:protein2genome:local	splice5	85470	85471	.	+	.	intron_id 1 ; splice_site "AT"
PVKD010002365.1:subseq(1,185888)	exonerate:protein2genome:local	intron	85470	85656	.	+	.	intron_id 1
PVKD010002365.1:subseq(1,185888)	exonerate:protein2genome:local	splice3	85655	85656	.	+	.	intron_id 0 ; splice_site "AG"
PVKD010002365.1:subseq(1,185888)	exonerate:protein2genome:local	cds	85657	85720	.	+	.	
PVKD010002365.1:subseq(1,185888)	exonerate:protein2genome:local	exon	85657	85720	.	+	.	insertions 0 ; deletions 0
PVKD010002365.1:subseq(1,185888)	exonerate:protein2genome:local	splice5	85721	85722	.	+	.	intron_id 2 ; splice_site "AT"
PVKD010002365.1:subseq(1,185888)	exonerate:protein2genome:local	intron	85721	85816	.	+	.	intron_id 2
PVKD010002365.1:subseq(1,185888)	exonerate:protein2genome:local	splice3	85815	85816	.	+	.	intron_id 1 ; splice_site "AG"
PVKD010002365.1:subseq(1,185888)	exonerate:protein2genome:local	cds	85817	85888	.	+	.	
PVKD010002365.1:subseq(1,185888)	exonerate:protein2genome:local	exon	85817	85888	.	+	.	insertions 0 ; deletions 0
PVKD010002365.1:subseq(1,185888)	exonerate:protein2genome:local	similarity	85411	85888	170	+	.	alignment_id 1 ; Query SPP00000117_1.0 ; Align 85411 4 57 ; Align 85658 24 63 ; Align 85817 45 72
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis