Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff --exhaustive yes -q query16 -t q_subseq]
Hostname: [am30741-101093u]

C4 Alignment:
------------
         Query: SPP00000110_1.0 # Protein # Selenoprotein H (SelH) # Mus musculus # Complete
        Target: PVKD010002365.1:subseq(1,188174) Cricetomys gambianus isolate US082 CriGam_scaffold_4727, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 490
   Query range: 6 -> 116
  Target range: 88174 -> 87670

     7 : LysArgLysAlaGlyAlaAlaProMetGluThrValAspLysArgGluLysLeuAlaGlu :    26
         ||||||||||||! !|||.!!|||  !||||||!.!||||||||||||||||||||||||
         LysArgLysAlaGluAlaThrProAlaGluThrAlaAspLysArgGluLysLeuAlaGlu
 88174 : AAGCGGAAGGCCGAGGCCACGCCAGCGGAGACGGCGGACAAGCGGGAGAAACTGGCGGAG : 88117

    27 : GlyAlaThrValValIleGluHis{Cy}  >>>> Target Intron 1 >>>>  {s} :    35
         ||||||..!|||||||||||||||{||}            90 bp            {|}
         GlyAlaValValValIleGluHis{Cy}++                         ++{s}
 88116 : GGCGCGGTTGTGGTCATTGAACAC{TG}gt.........................ag{C} : 87998

    36 : ThrSerUnkArgValTyrGlyArgHisAlaAlaAlaLeuSerGlnAlaLeuGlnLeuGlu :    55
         ||||||   ||||||||||||||||||||||||||||||||||||||||||!!.||||||
         ThrSer***ArgValTyrGlyArgHisAlaAlaAlaLeuSerGlnAlaLeuHisLeuGlu
 87997 : ACGAGCTGACGAGTGTACGGGCGCCATGCTGCTGCCCTGAGCCAGGCTCTGCACCTTGAG : 87940

    56 : AlaProGluLeuProValGlnValAsnProSerLysProArgArgGlySerPheGluVal :    75
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AlaProGluLeuProValGlnValAsnProSerLysProArgArgGlySerPheGluVal
 87939 : GCCCCAGAGCTGCCGGTGCAGGTGAACCCGTCCAAACCACGGAGGGGCAGCTTCGAGGTG : 87880

    76 : ThrLeuLeuArgSerAspAsnSer{A}  >>>> Target Intron 2 >>>>  {rg} :    84
         |||||||||||| !!|||||||||{|}            84 bp            {||}
         ThrLeuLeuArgProAspAsnSer{A}++                         ++{rg}
 87879 : ACGCTGCTGCGCCCGGACAACAGC{C}gt.........................ag{GT} : 87768

    85 : ValGluLeuTrpThrGlyIleLysLysGlyProProArgLysLeuLysPheProGluPro :   104
         !.!|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AlaGluLeuTrpThrGlyIleLysLysGlyProProArgLysLeuLysPheProGluPro
 87767 : GCCGAACTCTGGACTGGTATTAAGAAGGGCCCACCACGAAAGCTCAAATTTCCTGAGCCT : 87709

   105 : GlnGluValValGluGluLeuLysLysTyrLeuSer :   116
         ||||||||||||:!!|||||||||||||||||||||
         GlnGluValValLysGluLeuLysLysTyrLeuSer
 87708 : CAAGAGGTGGTCAAAGAATTGAAGAAGTACCTTTCA : 87671

vulgar: SPP00000110_1.0 6 116 . PVKD010002365.1:subseq(1,188174) 88174 87670 - 490 M 28 84 S 0 2 5 0 2 I 0 86 3 0 2 S 1 1 M 48 144 S 0 1 5 0 2 I 0 80 3 0 2 S 1 2 M 32 96
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
PVKD010002365.1:subseq(1,188174)	exonerate:protein2genome:local	gene	87671	88174	490	-	.	gene_id 1 ; sequence SPP00000110_1.0 ; gene_orientation +
PVKD010002365.1:subseq(1,188174)	exonerate:protein2genome:local	cds	88089	88174	.	-	.	
PVKD010002365.1:subseq(1,188174)	exonerate:protein2genome:local	exon	88089	88174	.	-	.	insertions 0 ; deletions 0
PVKD010002365.1:subseq(1,188174)	exonerate:protein2genome:local	splice5	88087	88088	.	-	.	intron_id 1 ; splice_site "GT"
PVKD010002365.1:subseq(1,188174)	exonerate:protein2genome:local	intron	87999	88088	.	-	.	intron_id 1
PVKD010002365.1:subseq(1,188174)	exonerate:protein2genome:local	splice3	87999	88000	.	-	.	intron_id 0 ; splice_site "AG"
PVKD010002365.1:subseq(1,188174)	exonerate:protein2genome:local	cds	87853	87998	.	-	.	
PVKD010002365.1:subseq(1,188174)	exonerate:protein2genome:local	exon	87853	87998	.	-	.	insertions 0 ; deletions 0
PVKD010002365.1:subseq(1,188174)	exonerate:protein2genome:local	splice5	87851	87852	.	-	.	intron_id 2 ; splice_site "GT"
PVKD010002365.1:subseq(1,188174)	exonerate:protein2genome:local	intron	87769	87852	.	-	.	intron_id 2
PVKD010002365.1:subseq(1,188174)	exonerate:protein2genome:local	splice3	87769	87770	.	-	.	intron_id 1 ; splice_site "AG"
PVKD010002365.1:subseq(1,188174)	exonerate:protein2genome:local	cds	87671	87768	.	-	.	
PVKD010002365.1:subseq(1,188174)	exonerate:protein2genome:local	exon	87671	87768	.	-	.	insertions 0 ; deletions 0
PVKD010002365.1:subseq(1,188174)	exonerate:protein2genome:local	similarity	87671	88174	490	-	.	alignment_id 1 ; Query SPP00000110_1.0 ; Align 88175 7 84 ; Align 87998 36 144 ; Align 87767 85 96
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis