Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff --exhaustive yes -q query14 -t q_subseq]
Hostname: [am30934-101072u]

C4 Alignment:
------------
         Query: SPP00000108_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Mus musculus # Complete
        Target: PVKD010013165.1:subseq(1,40083) Cricetomys gambianus isolate US082 CriGam_scaffold_26314, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 2219
   Query range: 4 -> 452
  Target range: 10244 -> 11588

     5 : AlaAlaAlaGlyAlaSerGlyGluThrMetAlaAlaLeuValAlaAlaGluGlySerLeu :    24
         ||||||||||||||||||||||||.!!||||||||||||||||||||||||||||||!!!
         AlaAlaAlaGlyAlaSerGlyGluAlaMetAlaAlaLeuValAlaAlaGluGlySerPhe
 10245 : GCGGCGGCGGGCGCCAGCGGAGAGGCCATGGCGGCGCTGGTGGCGGCGGAAGGTTCCTTC : 10302

    25 : GlyProAlaGlyTrpSerAlaGlyArgSerPheSerAsnTyrArgProPheGluProGln :    44
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyProAlaGlyTrpSerAlaGlyArgSerPheSerAsnTyrArgProPheGluProGln
 10303 : GGCCCGGCGGGCTGGTCTGCCGGCCGGAGCTTCTCCAACTACCGGCCGTTCGAGCCCCAG : 10362

    45 : ThrLeuGlyPheSerProSerTrpArgLeuThrSerPheSerGlyMetLysGlyUnkGly :    64
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||
         ThrLeuGlyPheSerProSerTrpArgLeuThrSerPheSerGlyMetLysGly***Gly
 10363 : ACCCTGGGCTTCAGCCCCAGCTGGCGGCTGACGAGCTTCTCCGGCATGAAGGGCTGAGGC : 10422

    65 : CysLysValProGlnGluThrLeuLeuLysLeuLeuGluGlyLeuThrArgProAlaLeu :    84
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         CysLysValProGlnGluThrLeuLeuLysLeuLeuGluGlyLeuThrArgProAlaLeu
 10423 : TGCAAGGTCCCCCAGGAGACGCTGCTCAAGCTCCTGGAGGGACTGACGCGGCCCGCGCTG : 10482

    85 : GlnProProLeuThrSerGlyLeuValGlyGlyGlnGluGluThrValGlnGluGlyGly :   104
         ||||||||||||.!! !!!.!||||||!.!|||||||||!!:||||||||||||||||||
         GlnProProLeuAlaProAlaLeuValAlaGlyGlnGluAspThrValGlnGluGlyGly
 10483 : CAGCCGCCGCTGGCCCCGGCTCTGGTCGCGGGCCAGGAAGACACGGTGCAGGAGGGGGGC : 10542

   105 : LeuSerThrArgProGlyProGlySerAlaPheProSerLeuSerIleGlyMetAspSer :   124
         ||||||..!||||||||||||.!!||||||.!.|||||||||||||||||||||||||||
         LeuSerValArgProGlyProSerSerAlaLeuProSerLeuSerIleGlyMetAspSer
 10543 : CTGTCGGTCAGGCCGGGCCCCAGCTCAGCCCTACCCTCGCTGAGCATTGGGATGGACTCC : 10602

   125 : CysValIleProLeuArgHisGlyGlyLeuSerLeuValGlnThrThrAspPhePheTyr :   144
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         CysValIleProLeuArgHisGlyGlyLeuSerLeuValGlnThrThrAspPhePheTyr
 10603 : TGCGTCATCCCCCTGAGGCACGGCGGCCTGTCGCTGGTACAGACCACCGACTTCTTTTAC : 10662

   145 : ProLeuValGluAspProTyrMetMetGlyArgIleAlaCysAlaAsnValLeuSerAsp :   164
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ProLeuValGluAspProTyrMetMetGlyArgIleAlaCysAlaAsnValLeuSerAsp
 10663 : CCGCTGGTGGAAGATCCCTACATGATGGGGCGCATAGCTTGTGCCAATGTGCTCAGTGAC : 10722

   165 : LeuTyrAlaMetGlyIleThrGluCysAspAsnMetLeuMetLeuLeuSerValSerGln :   184
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LeuTyrAlaMetGlyIleThrGluCysAspAsnMetLeuMetLeuLeuSerValSerGln
 10723 : CTCTACGCCATGGGCATTACTGAGTGTGACAACATGTTGATGTTACTCAGTGTCAGCCAG : 10782

   185 : SerMetSerGluLysGluArgGluLysValThrProLeuMetIleLysGlyPheArgAsp :   204
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         SerMetSerGluLysGluArgGluLysValThrProLeuMetIleLysGlyPheArgAsp
 10783 : AGCATGAGTGAGAAGGAGCGAGAGAAGGTAACGCCGCTCATGATCAAAGGCTTTCGCGAT : 10842

   205 : AlaAlaGluGluGlyGlyThrAlaValThrGlyGlyGlnThrValValAsnProTrpIle :   224
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AlaAlaGluGluGlyGlyThrAlaValThrGlyGlyGlnThrValValAsnProTrpIle
 10843 : GCTGCGGAGGAGGGCGGAACTGCAGTGACAGGCGGACAGACAGTGGTCAACCCTTGGATT : 10902

   225 : IleIleGlyGlyValAlaThrValValCysGlnGlnAsnGluPheIleMetProAspSer :   244
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         IleIleGlyGlyValAlaThrValValCysGlnGlnAsnGluPheIleMetProAspSer
 10903 : ATCATCGGTGGGGTTGCCACTGTGGTGTGTCAGCAAAACGAATTCATAATGCCTGACAGT : 10962

   245 : AlaValValGlyAspValLeuValLeuThrLysProLeuGlyThrGlnValAlaAlaAsn :   264
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AlaValValGlyAspValLeuValLeuThrLysProLeuGlyThrGlnValAlaAlaAsn
 10963 : GCAGTGGTAGGAGATGTGCTGGTGTTAACTAAACCCTTAGGAACCCAGGTTGCCGCCAAT : 11022

   265 : AlaHisGlnTrpLeuAspAsnProGluLysTrpAsnLysIleLysMetValValSerArg :   284
         |||||||||||||||||||||||||||!:!|||||||||||||||||||||||||||!:!
         AlaHisGlnTrpLeuAspAsnProGluArgTrpAsnLysIleLysMetValValSerLys
 11023 : GCCCACCAATGGCTGGACAATCCTGAGAGGTGGAATAAAATCAAGATGGTAGTTTCCAAG : 11082

   285 : GluGluValGluLeuAlaTyrGlnGluAlaMetPheAsnMetAlaThrLeuAsnArgThr :   304
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GluGluValGluLeuAlaTyrGlnGluAlaMetPheAsnMetAlaThrLeuAsnArgThr
 11083 : GAGGAAGTAGAGTTGGCCTATCAGGAAGCTATGTTCAACATGGCTACTCTAAACAGAACT : 11142

   305 : AlaAlaGlyLeuMetHisThrPheAsnAlaHisAlaAlaThrAspIleThrGlyPheGly :   324
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AlaAlaGlyLeuMetHisThrPheAsnAlaHisAlaAlaThrAspIleThrGlyPheGly
 11143 : GCTGCTGGCTTGATGCACACGTTCAATGCCCACGCAGCCACGGATATCACAGGCTTTGGC : 11202

   325 : IleLeuGlyHisSerGlnAsnLeuAlaLysGlnGlnLysAsnGluValSerPheValIle :   344
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         IleLeuGlyHisSerGlnAsnLeuAlaLysGlnGlnLysAsnGluValSerPheValIle
 11203 : ATTTTAGGACACTCTCAGAACCtcgcaaaacaacaaaaaaatgaagtGTCGTTTGTCATT : 11262

   345 : HisAsnLeuProIleIleAlaLysMetAlaAlaIleSerLysAlaSerGlyArgPheGly :   364
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         HisAsnLeuProIleIleAlaLysMetAlaAlaIleSerLysAlaSerGlyArgPheGly
 11263 : CATAATCTGCCAATCATTGCCAAGATGGCTGCCATCAGCAAAGCCAGTGGGCGCTTCGGC : 11322

   365 : LeuLeuGlnGlyThrSerAlaGluThrSerGlyGlyLeuLeuIleCysLeuProArgGlu :   384
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LeuLeuGlnGlyThrSerAlaGluThrSerGlyGlyLeuLeuIleCysLeuProArgGlu
 11323 : CTCCTCCAAGGAACATCAGCTGAGACCTCTGGGGGATTACTGATCTGTCTGCCAAGAGAA : 11382

   385 : GlnAlaAlaArgPheCysSerGluIleLysSerSerLysTyrGlyGluGlyHisGlnAla :   404
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlnAlaAlaArgPheCysSerGluIleLysSerSerLysTyrGlyGluGlyHisGlnAla
 11383 : CAGGCAGCCCGTTTTTGTTCTGAAATCAAATCTTCCAAGTATGGAGAGGGTCACCAAGCA : 11442

   405 : TrpIleValGlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspLysProArg :   424
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         TrpIleValGlyIleValGluLysGlyAsnArgThrAlaArgIleIleAspLysProArg
 11443 : TGGATCGTCGGCATTGTGGAGAAGGGAAACCGGACAGCCCGGATCATTGACAAGCCTCGC : 11502

   425 : ValIleGluValLeuProArgGlyAlaSerAlaAlaAlaAlaAlaAlaProAspAsnSer :   444
         |||||||||||||||||||||||||||!!!|||.!!||||||  !|||||||||||||||
         ValIleGluValLeuProArgGlyAlaThrAlaThrAlaAlaLeuAlaProAspAsnSer
 11503 : GTTATTGAAGTTCTACCTCGGGGAGCCACTGCTACTGCTGCTCTCGCCCCTGATAATTCC : 11562

   445 : AsnAlaAlaSerGluProSerSer :   452
         ||||||||||||||||||||||||
         AsnAlaAlaSerGluProSerSer
 11563 : AACGCAGCCTCTGAGCCTAGTTCA : 11588

vulgar: SPP00000108_1.0 4 452 . PVKD010013165.1:subseq(1,40083) 10244 11588 + 2219 M 448 1344
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
PVKD010013165.1:subseq(1,40083)	exonerate:protein2genome:local	gene	10245	11588	2219	+	.	gene_id 1 ; sequence SPP00000108_1.0 ; gene_orientation .
PVKD010013165.1:subseq(1,40083)	exonerate:protein2genome:local	cds	10245	11588	.	+	.	
PVKD010013165.1:subseq(1,40083)	exonerate:protein2genome:local	exon	10245	11588	.	+	.	insertions 0 ; deletions 0
PVKD010013165.1:subseq(1,40083)	exonerate:protein2genome:local	similarity	10245	11588	2219	+	.	alignment_id 1 ; Query SPP00000108_1.0 ; Align 10245 5 1344
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis