Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff --exhaustive yes -q query11 -t q_subseq]
Hostname: [am30751-101042u]

C4 Alignment:
------------
         Query: SPP00000078_1.0 # Protein # Methionine sulfoxide reductase A (MsrA) # Mus musculus # Complete
        Target: PVKD010019530.1:subseq(1,18402) Cricetomys gambianus isolate US082 CriGam_scaffold_39030, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 285
   Query range: 160 -> 232
  Target range: 17092 -> 14237

   161 : ProThrSerAlaValGlnMetGluAlaAlaLeuArgSerLysGluGluTyrGln{L}  > :   179
         |||! !!:!  !  !!  !!:|||!.!|||  !||||||   !  ..!!:!! !{:}   
         ProArgAsnArgLysProIleGluValAlaSerArgSerCysGlyArgPhePro{G}++ 
 17092 : CCCAGGAACAGAAAACCTATAGAGGTGGCCAGCAGGAGCTGTGGCAGGTTCCCA{G}gt. : 17035

   180 : >>> Target Intron 1 >>>>  {ys}ValLeuSerLysHisAsnPheGlyProIle :   189
                 2639 bp           {!!}|||||||||||||||..!||||||||||||
                                 +-{lu}ValLeuSerLysHisGlyPheGlyProIle
 17034 : ........................ac{AG}GTTCTTTCAAAGCATGGCTTTGGGCCCATC : 14369

   190 : ThrThrAspIleArgGluGlyGlnValPheTyrTyrAlaGluAspTyrHisGlnGlnTyr :   209
         ||||||||||||||||||||||||!.!|||||||||||||||||||||||||||||||||
         ThrThrAspIleArgGluGlyGlnAlaPheTyrTyrAlaGluAspTyrHisGlnGlnTyr
 14368 : ACCACTGACATCCGAGAGGGACAGGCGTTCTACTACGCCGAAGACTACCACCAGCAATAC : 14309

   210 : LeuSerLysAsnProAspGlyTyrCysGlyLeuGlyGlyThrGlyValSerCysProMet :   229
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LeuSerLysAsnProAspGlyTyrCysGlyLeuGlyGlyThrGlyValSerCysProMet
 14308 : CTGAGCAAGAACCCAGATGGCTACTGCGGCCTCGGAGGCACTGGGGTTTCCTGTCCGATG : 14249

   230 : AlaIleLys :   232
         !.!!  |||
         GlyArgLys
 14248 : GGCAGGAAA : 14238

vulgar: SPP00000078_1.0 160 232 . PVKD010019530.1:subseq(1,18402) 17092 14237 - 285 M 18 54 S 0 1 5 0 2 I 0 2635 3 0 2 S 1 2 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
PVKD010019530.1:subseq(1,18402)	exonerate:protein2genome:local	gene	14238	17092	285	-	.	gene_id 1 ; sequence SPP00000078_1.0 ; gene_orientation +
PVKD010019530.1:subseq(1,18402)	exonerate:protein2genome:local	cds	17038	17092	.	-	.	
PVKD010019530.1:subseq(1,18402)	exonerate:protein2genome:local	exon	17038	17092	.	-	.	insertions 0 ; deletions 0
PVKD010019530.1:subseq(1,18402)	exonerate:protein2genome:local	splice5	17036	17037	.	-	.	intron_id 1 ; splice_site "GT"
PVKD010019530.1:subseq(1,18402)	exonerate:protein2genome:local	intron	14399	17037	.	-	.	intron_id 1
PVKD010019530.1:subseq(1,18402)	exonerate:protein2genome:local	splice3	14399	14400	.	-	.	intron_id 0 ; splice_site "ac"
PVKD010019530.1:subseq(1,18402)	exonerate:protein2genome:local	cds	14238	14398	.	-	.	
PVKD010019530.1:subseq(1,18402)	exonerate:protein2genome:local	exon	14238	14398	.	-	.	insertions 0 ; deletions 0
PVKD010019530.1:subseq(1,18402)	exonerate:protein2genome:local	similarity	14238	17092	285	-	.	alignment_id 1 ; Query SPP00000078_1.0 ; Align 17093 161 54 ; Align 14397 180 159
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis