Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff --exhaustive yes -q query2 -t q_subseq]
Hostname: [am33112-116063u]

C4 Alignment:
------------
         Query: SPP00000099_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Mus musculus # Complete
        Target: PVKD010000980.1:subseq(1,155261) Cricetomys gambianus isolate US082 CriGam_scaffold_1957, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 981
   Query range: 0 -> 190
  Target range: 51939 -> 55261

     1 : MetAlaTyrIleAlaLysSerPheTyrAspLeuSerAlaValGlyLeuAspGlyGluLys :    20
         |||||||||||||||||||||||||||||||||||||||:!!.!!|||||||||||||||
         MetAlaTyrIleAlaLysSerPheTyrAspLeuSerAlaIleSerLeuAspGlyGluLys
 51940 : ATGGCTTACATCGCCAAGTCTTTCTATGACCTCAGTGCCATCAGCCTGGATGGGGAGAAG : 51997

    21 : IleAspPheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLeuUnk :    40
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
         IleAspPheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLeu***
 51998 : ATAGATTTTAACACGTTCCGAGGCAGGGCAGTGCTGATCGAGAACGTGGCATCGCTCTGA : 52057

    41 : GlyThrThrThrArgAspTyrAsnGlnLeuAsnGluLeuGlnCysArgPheProArgArg :    60
         ||||||||||||||||||!:!|||||||||||||||||||||||||||||||||||||||
         GlyThrThrThrArgAspPheAsnGlnLeuAsnGluLeuGlnCysArgPheProArgArg
 52058 : GGAACGACCACCCGGGACTTCAACCAGCTCAATGAGTTGCAATGTCGATTTCCCAGGCGC : 52117

    61 : LeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln  >>>> Target Intr :    75
         ||||||||||||||||||||||||||||||||||||||||||           2752 bp
         LeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln++                
 52118 : CTGGTGGTTCTCGGTTTCCCTTGCAACCAATTTGGACATCAGgt................ : 52164

    76 : on 1 >>>>  GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLysTyrValArgP :    91
                    |||||||||!:!|||||||||||||||||||||||||||||||||||||
                  ++GluAsnCysArgAsnGluGluIleLeuAsnSerLeuLysTyrValArgP
 52165 : .........agGAGAACTGTCGGAATGAGGAGATCCTGAACAGCCTCAAGTACGTCCGCC : 54962

    92 : roGlyGlyGlyTyrGlnProThrPheSerLeuThrGlnLysCysAspValAsnGlyGlnA :   111
         ||||||||||||||||||||||||||:!!|||||||||||||||||||||||||||||||
         roGlyGlyGlyTyrGlnProThrPheAlaLeuThrGlnLysCysAspValAsnGlyGlnA
 54963 : CAGGAGGTGGGTACCAGCCCACCTTCGCCCTTACCCAGAAGTGTGATGTCAATGGGCAGA : 55022

   112 : snGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrProTyrAspAspProP :   131
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         snGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrProTyrAspAspProP
 55023 : ATGAGCATCCTGTCTTTGCCTACCTGAAAGACAAGCTGCCCTATCCTTATGATGACCCAT : 55082

   132 : heSerLeuMetThrAspProLysLeuIleIleTrpSerProValArgArgSerAspValS :   151
         |||||||||||||||||||||||!!!|||:!:||||||||||||||||||||||||||||
         heSerLeuMetThrAspProLysPheIleLeuTrpSerProValArgArgSerAspValS
 55083 : TCTCCCTCATGACCGATCCCAAGTTCATCTTGTGGAGTCCCGTGCGCCGCTCGGATGTGT : 55142

   152 : erTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluProPheArgArgTyrSerA :   171
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         erTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluProPheArgArgTyrSerA
 55143 : CCTGGAACTTTGAGAAGTTCCTCATAGGGCCAGAAGGGGAGCCCTTCCGTCGCTACAGCC : 55202

   172 : rgSerPheGlnThrIleAsnIleGluProAspIleLysArgLeuLeuLysValAlaIle :   190
         ||!!!||||||||||||||||||||||||||||||||||||||||||||||||||||||
         rgThrPheGlnThrIleAsnIleGluProAspIleLysArgLeuLeuLysValAlaIle
 55203 : GTACCTTCCAAACCATCAACATCGAGCCTGACATCAAACGTCTCCTCAAAGTTGCCATC : 55261

vulgar: SPP00000099_1.0 0 190 . PVKD010000980.1:subseq(1,155261) 51939 55261 + 981 M 74 222 5 0 2 I 0 2748 3 0 2 M 116 348
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
PVKD010000980.1:subseq(1,155261)	exonerate:protein2genome:local	gene	51940	55261	981	+	.	gene_id 1 ; sequence SPP00000099_1.0 ; gene_orientation +
PVKD010000980.1:subseq(1,155261)	exonerate:protein2genome:local	cds	51940	52161	.	+	.	
PVKD010000980.1:subseq(1,155261)	exonerate:protein2genome:local	exon	51940	52161	.	+	.	insertions 0 ; deletions 0
PVKD010000980.1:subseq(1,155261)	exonerate:protein2genome:local	splice5	52162	52163	.	+	.	intron_id 1 ; splice_site "GT"
PVKD010000980.1:subseq(1,155261)	exonerate:protein2genome:local	intron	52162	54913	.	+	.	intron_id 1
PVKD010000980.1:subseq(1,155261)	exonerate:protein2genome:local	splice3	54912	54913	.	+	.	intron_id 0 ; splice_site "AG"
PVKD010000980.1:subseq(1,155261)	exonerate:protein2genome:local	cds	54914	55261	.	+	.	
PVKD010000980.1:subseq(1,155261)	exonerate:protein2genome:local	exon	54914	55261	.	+	.	insertions 0 ; deletions 0
PVKD010000980.1:subseq(1,155261)	exonerate:protein2genome:local	similarity	51940	55261	981	+	.	alignment_id 1 ; Query SPP00000099_1.0 ; Align 51940 1 222 ; Align 54914 75 348
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis