Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff --exhaustive yes -q query1 -t q_subseq]
Hostname: [am33111-116073u]

C4 Alignment:
------------
         Query: SPP00000098_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Mus musculus # Complete
        Target: PVKD010000564.1:subseq(1,195193) Cricetomys gambianus isolate US082 CriGam_scaffold_1125, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 960
   Query range: 0 -> 197
  Target range: 94402 -> 95193

     1 : MetCysAlaAlaArgLeuSerAlaAlaAlaGlnSerThrValTyrAlaPheSerAlaArg :    20
         |||||||||:!!||||||||||||!.!|||||||||||||||||||||||||||||||||
         MetCysAlaSerArgLeuSerAlaValAlaGlnSerThrValTyrAlaPheSerAlaArg
 94403 : ATGTGTGCTTCTCGGCTCTCCGCGGTGGCGCAGTCCACCGTGTACGCCTTCTCTGCGCGC : 94460

    21 : ProLeuThrGlyGlyGluProValSerLeuGlySerLeuArgGlyLysValLeuLeuIle :    40
         ||||||.!!|||||||||||||||||||||||||||||||||||||||||||||||||||
         ProLeuAlaGlyGlyGluProValSerLeuGlySerLeuArgGlyLysValLeuLeuIle
 94461 : CCGCTGGCGGGCGGGGAGCCTGTGAGCCTGGGCTCCCTGCGGGGCAAGGTGTTGCTCATT : 94520

    41 : GluAsnValAlaSerLeuUnkGlyThrThrIleArgAspTyrThrGluMetAsnAspLeu :    60
         ||||||||||||||||||   |||||||||!  |||||||||||||||||||||||||||
         GluAsnValAlaSerLeu***GlyThrThrThrArgAspTyrThrGluMetAsnAspLeu
 94521 : GAGAACGTTGCGTCCCTCTGAGGCACCACGACGCGGGACTACACTGAGATGAATGATCTG : 94580

    61 : GlnLysArgLeuGlyProArgGlyLeuValValLeuGlyPheProCysAsnGlnPheGly :    80
         |||!:!|||||||||||||||||||||:!!||||||||||||||||||||||||||||||
         GlnArgArgLeuGlyProArgGlyLeuMetValLeuGlyPheProCysAsnGlnPheGly
 94581 : CAAAGACGCCTCGGGCCCCGTGGCCTGATGGTGCTCGGTTTCCCGTGCAATCAGTTTGGA : 94640

    81 : HisGln  >>>> Target Intron 1 >>>>  GluAsnGlyLysAsnGluGluIleL :    91
         ||||||            200 bp           ||||||!.!||||||||||||||||
         HisGln++                         ++GluAsnAlaLysAsnGluGluIleL
 94641 : CATCAGgt.........................aggaGAATGCCAAGAACGAAGAAATTC : 94873

    92 : euAsnSerLeuLysTyrValArgProGlyGlyGlyPheGluProAsnPheThrLeuPheG :   111
         |||||||||||||||||:!!||||||||||||||||||||||||! !||| !!|||||||
         euAsnSerLeuLysTyrIleArgProGlyGlyGlyPheGluProIlePheProLeuPheG
 94874 : TGAATTCCCTCAAGTACATCCGACCCGGTGGTGGATTTGAACCCATCTTTCCACTGTTCG : 94933

   112 : luLysCysGluValAsnGlyGluLysAlaHisProLeuPheThrPheLeuArgAsnAlaL :   131
         |||||||||||||||||||||||||||||||||||||||||||||||||||||.!.||||
         luLysCysGluValAsnGlyGluLysAlaHisProLeuPheThrPheLeuArgGluAlaL
 94934 : AGAAGTGCGAGGTGAATGGTGAGAAGGCTCACCCGCTCTTTACCTTCCTGCGGGAGGCCT : 94993

   132 : euProThrProSerAspAspProThrAlaLeuMetThrAspProLysTyrIleIleTrpS :   151
         |||||.!!|||||||||||||||||||||||||||||||||||||||!:!||||||||||
         euProAlaProSerAspAspProThrAlaLeuMetThrAspProLysPheIleIleTrpS
 94994 : TGCCAGCGCCCAGTGACGACCCCACTGCGCTCATGACCGACCCCAAGTTCATCATCTGGT : 95053

   152 : erProValCysArgAsnAspIleAlaTrpAsnPheGluLysPheLeuValGlyProAspG :   171
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         erProValCysArgAsnAspIleAlaTrpAsnPheGluLysPheLeuValGlyProAspG
 95054 : CTCCGGTGTGCCGCAACGACATTGCCTGGAACTTCGAGAAGTTCCTGGTGGGCCCAGACG : 95113

   172 : lyValProValArgArgTyrSerArgArgPheArgThrIleAspIleGluProAspIleG :   191
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         lyValProValArgArgTyrSerArgArgPheArgThrIleAspIleGluProAspIleG
 95114 : GTGTTCCGGTGCGTAGGTACAGCCGCCGCTTTCGCACCATCGACATTGAACCCGACATAG : 95173

   192 : luThrLeuLeuSerGlnGln :   197
         ||.!!|||||||||||||||
         luAlaLeuLeuSerGlnGln
 95174 : AAGCCCTGCTGTCCCAGCAG : 95193

vulgar: SPP00000098_1.0 0 197 . PVKD010000564.1:subseq(1,195193) 94402 95193 + 960 M 82 246 5 0 2 I 0 196 3 0 2 M 115 345
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
PVKD010000564.1:subseq(1,195193)	exonerate:protein2genome:local	gene	94403	95193	960	+	.	gene_id 1 ; sequence SPP00000098_1.0 ; gene_orientation +
PVKD010000564.1:subseq(1,195193)	exonerate:protein2genome:local	cds	94403	94648	.	+	.	
PVKD010000564.1:subseq(1,195193)	exonerate:protein2genome:local	exon	94403	94648	.	+	.	insertions 0 ; deletions 0
PVKD010000564.1:subseq(1,195193)	exonerate:protein2genome:local	splice5	94649	94650	.	+	.	intron_id 1 ; splice_site "GT"
PVKD010000564.1:subseq(1,195193)	exonerate:protein2genome:local	intron	94649	94848	.	+	.	intron_id 1
PVKD010000564.1:subseq(1,195193)	exonerate:protein2genome:local	splice3	94847	94848	.	+	.	intron_id 0 ; splice_site "ag"
PVKD010000564.1:subseq(1,195193)	exonerate:protein2genome:local	cds	94849	95193	.	+	.	
PVKD010000564.1:subseq(1,195193)	exonerate:protein2genome:local	exon	94849	95193	.	+	.	insertions 0 ; deletions 0
PVKD010000564.1:subseq(1,195193)	exonerate:protein2genome:local	similarity	94403	95193	960	+	.	alignment_id 1 ; Query SPP00000098_1.0 ; Align 94403 1 246 ; Align 94849 83 345
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis