Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff --exhaustive yes -q query10 -t q_subseq]
Hostname: [am30332-131235u]

C4 Alignment:
------------
         Query: SPP00000097_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) # Mus musculus # Complete
        Target: PVKD010004213.1:subseq(1,133221) Cricetomys gambianus isolate US082 CriGam_scaffold_8421, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1279
   Query range: 0 -> 260
  Target range: 65800 -> 56998

     1 : MetGlyLeuLeuSerValAspLeuLeuIleThrLeuGlnIleLeuProValPhePheSer :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         MetGlyLeuLeuSerValAspLeuLeuIleThrLeuGlnIleLeuProValPhePheSer
 65800 : ATGGGACTCCTCAGCGTAGACTTGCTGATCACACTGCAGATTCTGCCAGTCTTTTTCTCC : 65743

    21 : AsnCysLeuPheLeuAlaLeuTyrAspSerValIleLeuLeuLysHisValAlaLeuLeu :    40
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AsnCysLeuPheLeuAlaLeuTyrAspSerValIleLeuLeuLysHisValAlaLeuLeu
 65742 : AACTGCCTCTTCCTGGCGCTCTATGACTCGGTCATTCTGCTCAAGCACGTGGCACTGCTG : 65683

    41 : LeuSerArgSerLysSerThrArgGlyGluTrpArgArgMetLeuThrSerGluGlyLeu :    60
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LeuSerArgSerLysSerThrArgGlyGluTrpArgArgMetLeuThrSerGluGlyLeu
 65682 : CTCAGCCGCTCCAAGTCCACTCGCGGAGAGTGGCGGCGCATGCTGACCTCAGAGGGACTG : 65623

    61 : ArgCysValTrpAsnSerPheLeuLeuAspAlaTyrLysGln  >>>> Target Intr :    75
         ||||||||||||!!.|||||||||||||||||||||||||||           8016 bp
         ArgCysValTrpLysSerPheLeuLeuAspAlaTyrLysGln++                
 65622 : CGCTGTGTCTGGAAGAGCTTCCTCCTAGATGCCTACAAACAGgt................ : 65576

    76 : on 1 >>>>  ValLysLeuGlyGluAspAlaProAsnSerSerValValHisValSerA :    91
                    |||||||||||||||||||||||||||||||||||||||||||||||||
                  ++ValLysLeuGlyGluAspAlaProAsnSerSerValValHisValSerA
 65575 : .........agGTTAAATTGGGTGAAGATGCCCCCAATTCCAGTGTGGTACATGTGTCCA : 57514

    92 : snProGluSerGlyAsnAsnTyrAlaSerGluLysThrAlaAspGlyAlaGluCysHisL :   111
         ||||||||:!!|||||||||:!!|||! !||||||||||||||||||.!!||||||||||
         snProGluAlaGlyAsnAsnHisAlaLeuGluLysThrAlaAspGlyThrGluCysHisL
 57513 : ATCCTGAAGCAGGGAACAATCACGCCTTGGAGAAGACAGCTGATGGTACCGAATGTCACC : 57454

   112 : euLeuAspPheAlaSerAlaGluArgProLeuValValAsnPheGlySerAlaThr<->< :   130
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
         euLeuAspPheAlaSerAlaGluArgProLeuValValAsnPheGlySerAlaThr***P
 57453 : TCCTTGACTTTGCCAGTGCAGAGCGCCCGCTGGTGGTCAACTTTGGTTCAGCCACCTGAC : 57394

   131 : ->ProPheThrArgGlnLeuProAlaPheArgGlnLeuValGluGluPheSerSerValA :   149
           ||||||||||||||||||||||||||| !!||||||||||||||||||||||||||||
         roProPheThrArgGlnLeuProAlaPheCysGlnLeuValGluGluPheSerSerValA
 57393 : CACCTTTCACTAGGCAACTGCCAGCCTTCTGCCAGCTGGTGGAAGAGTTCTCGTCAGTGG : 57334

   150 : laAspPheLeuLeuValTyrIleAspGluAlaHisProSerAspGlyTrpAlaValProG :   169
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         laAspPheLeuLeuValTyrIleAspGluAlaHisProSerAspGlyTrpAlaValProG
 57333 : CCGACTTCCTATTGGTGTACATCGATGAGGCTCACCCTTCAGATGGCTGGGCAGTGCCTG : 57274

   170 : lyAspSerSerLeuSerPheGluValLysLysHisArgAsnGlnGluAspArgCysAlaA :   189
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         lyAspSerSerLeuSerPheGluValLysLysHisArgAsnGlnGluAspArgCysAlaA
 57273 : GGGACTCCTCCCTGTCGTTTGAGGTGAAGAAGCACCGGAACCAAGAGGACCGATGTGCAG : 57214

   190 : laAlaHisGlnLeuLeuGluArgPheSerLeuProProGlnCysGlnValValAlaAspA :   209
         ||||||||:!!|||||||||||||||||||||||||||||||||||||||||||||||||
         laAlaHisLysLeuLeuGluArgPheSerLeuProProGlnCysGlnValValAlaAspA
 57213 : CAGCCCACAAGCTCCTGGAGCGTTTCTCCTTGCCGCCCCAGTGTCAAGTTGTGGCTGACC : 57154

   210 : rgMetAspAsnAsnAlaAsnValAlaTyrGlyValAlaPheGluArgValCysIleValG :   229
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         rgMetAspAsnAsnAlaAsnValAlaTyrGlyValAlaPheGluArgValCysIleValG
 57153 : GCATGGACAATAATGCCAACGTAGCTTACGGGGTAGCCTTTGAACGTGTGTGCATCGTAC : 57094

   230 : lnArgArgLysIleAlaTyrLeuGlyGlyLysGlyProPheSerTyrAsnLeuGlnGluV :   249
         |||||!:!||||||||||||||||||||||||||||||||||||||||||||||||||||
         lnArgGlnLysIleAlaTyrLeuGlyGlyLysGlyProPheSerTyrAsnLeuGlnGluV
 57093 : AAAGACAGAAAATTGCTTATTTAGGGGGAAAGGGTCCCTTCAGCTACAATCTTCAAGAAG : 57034

   250 : alArgSerTrpLeuGluLysAsnPheSerLysArg :   260
         |||||||||||||||||||||||||||||||||||
         alArgSerTrpLeuGluLysAsnPheSerLysArg
 57033 : TCCGGAGTTGGCTGGAGAAAAACTTCAGCAAGAGA : 56999

vulgar: SPP00000097_1.0 0 260 . PVKD010004213.1:subseq(1,133221) 65800 56998 - 1279 M 74 222 5 0 2 I 0 8012 3 0 2 M 55 165 G 0 6 M 131 393
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-22
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
PVKD010004213.1:subseq(1,133221)	exonerate:protein2genome:local	gene	56999	65800	1279	-	.	gene_id 1 ; sequence SPP00000097_1.0 ; gene_orientation +
PVKD010004213.1:subseq(1,133221)	exonerate:protein2genome:local	cds	65579	65800	.	-	.	
PVKD010004213.1:subseq(1,133221)	exonerate:protein2genome:local	exon	65579	65800	.	-	.	insertions 0 ; deletions 0
PVKD010004213.1:subseq(1,133221)	exonerate:protein2genome:local	splice5	65577	65578	.	-	.	intron_id 1 ; splice_site "GT"
PVKD010004213.1:subseq(1,133221)	exonerate:protein2genome:local	intron	57563	65578	.	-	.	intron_id 1
PVKD010004213.1:subseq(1,133221)	exonerate:protein2genome:local	splice3	57563	57564	.	-	.	intron_id 0 ; splice_site "AG"
PVKD010004213.1:subseq(1,133221)	exonerate:protein2genome:local	cds	56999	57562	.	-	.	
PVKD010004213.1:subseq(1,133221)	exonerate:protein2genome:local	exon	56999	57562	.	-	.	insertions 6 ; deletions 0
PVKD010004213.1:subseq(1,133221)	exonerate:protein2genome:local	similarity	56999	65800	1279	-	.	alignment_id 1 ; Query SPP00000097_1.0 ; Align 65801 1 222 ; Align 57563 75 165 ; Align 57392 130 393
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis