Command line: [/mnt/NFS_UPF/soft/exonerate/exonerate-2.2.0-x86_64/bin/exonerate -m p2g --showtargetgff --exhaustive yes -q query9 -t q_subseq]
Hostname: [am30751-101042u]

C4 Alignment:
------------
         Query: SPP00000096_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) # Mus musculus # Complete
        Target: PVKD010015863.1:subseq(1,28915) Cricetomys gambianus isolate US082 CriGam_scaffold_31703, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 555
   Query range: 5 -> 115
  Target range: 3063 -> 2733

    6 : LeuTrpLeuTrpLeuLysArgLeuValIlePheLeuGlnValAlaLeuGluValAlaValGl :   26
        ||||||||||||||||||||||||!.!|||||||||||||||||||||||||||||||||||
        LeuTrpLeuTrpLeuLysArgLeuAlaIlePheLeuGlnValAlaLeuGluValAlaValGl
 3063 : ctgtggctgtggctgaaGCGGCTAGCGATATTCTTGCAGGTAGCCTTGGAGGTGGCTGTGGG : 3003

   27 : yLysValLeuMetThrLeuPheProGlyArgValLysGlnSerIleLeuAlaMetGlyGlnL :   47
        |||||||||||||||||||||||||||||||:!!||||||  !|||||||||:!!|||||||
        yLysValLeuMetThrLeuPheProGlyArgIleLysGlnHisIleLeuAlaLeuGlyGlnL
 3002 : CAAGGTGCTAATGACACTGTTCCCGGGAAGAATCAAGCAGCACATCTTGGCCTTGGGCCAAA : 2940

   48 : ysThrGlyMetAlaArgAsnProArgPheAlaProAspAsnTrpValProThrPhePheSer :   67
        |||||||||||||||||||||||||||||::!||||||||||||||||||||||||||||||
        ysThrGlyMetAlaArgAsnProArgPheSerProAspAsnTrpValProThrPhePheSer
 2939 : AGACCGGAATGGCCAGGAATCCCCGATTCAGCCCCGACAACTGGGTCCCAACCTTCTTCAGC : 2880

   68 : IleGlnTyrPheTrpPheValLeuLysValArgTrpGlnArgLeuGluAspArgAlaGluPh :   88
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||!:
        IleGlnTyrPheTrpPheValLeuLysValArgTrpGlnArgLeuGluAspArgAlaGluTy
 2879 : ATCCAGTACTTCTGGTTCGTCTTGAAGGTCCGGTGGCAGAGATTGGAGGACAGGGCTGAGTA : 2817

   89 : eGlyGlyLeuAlaProAsnCysThrValValCysLeuSerGlyGlnLysCysAsnIleTrpA :  109
        !|||||||||||||||||||||||||||||| !!||||||||||||||||||||||||||||
        rGlyGlyLeuAlaProAsnCysThrValValArgLeuSerGlyGlnLysCysAsnIleTrpA
 2816 : TGGGGGGCTGGCCCCCAACTGCACGGTGGTCCGCCTCTCAGGACAGAAGTGCAACATCTGGG : 2754

  110 : spPheIleGlnGlySerArg :  115
        ||||||||||||||..!!:!
        spPheIleGlnGlyGlnGln
 2753 : ATTTCATTCAAGGTCAGCAG : 2734

vulgar: SPP00000096_1.0 5 115 . PVKD010015863.1:subseq(1,28915) 3063 2733 - 555 M 110 330
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2019-11-20
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
PVKD010015863.1:subseq(1,28915)	exonerate:protein2genome:local	gene	2734	3063	555	-	.	gene_id 1 ; sequence SPP00000096_1.0 ; gene_orientation .
PVKD010015863.1:subseq(1,28915)	exonerate:protein2genome:local	cds	2734	3063	.	-	.	
PVKD010015863.1:subseq(1,28915)	exonerate:protein2genome:local	exon	2734	3063	.	-	.	insertions 0 ; deletions 0
PVKD010015863.1:subseq(1,28915)	exonerate:protein2genome:local	similarity	2734	3063	555	-	.	alignment_id 1 ; Query SPP00000096_1.0 ; Align 3064 6 330
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis