_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-37
 Query name: gi|459990350|gb|AGH03267.1| glutathione peroxidase 4a [Sparus aurata]
 Query range: 1-177  (total 186)

 Target: /data/www-rg/seblastian_results/871201701/tempfiles/temptarget.fasta
 Chromosome: WARS01000029.1:subseq_18087748,200000_:subseq_0,120000_ Strand: +
 Positions:
 -Exon 1  99483        99533
 -Exon 2  99826        99920
 -Exon 3  100014       100158
 -Exon 4  100483       100634
 -Exon 5  100835       100859
 -Exon 6  101100       101162

 Redox box: no

Query   MRLIGSTVLFSVLLQAM <---Intron---> AAPTEDWQTATSIYNFSATDIDGNLVSLEKYR <---Intron---> GNVVIITNVASKUGKTPVN
        ||||||||||||||||| <   292bp    > /|||||||||||||/|||||||||||||/||| <    93bp    > |||||||||||||||||||
Target  MRLIGSTVLFSVLLQAM                SAPTEDWQTATSIYDFSATDIDGNLVSLDKYR                GNVVIITNVASKUGKTPVN
        actagtagcttgcccga                tgcaggtcagatatgttgagaggatgtcgata                gaggaaaaggtatgaacga
        tgttgcctttctttact                ccccaagacccctaatcccatagattctaaag                gattttcatccaggaccta
        gcgagctctctcgggcg                ttgagcggacgtttccaaatttctgtcacac                ggttcccccactaacacaac
                                                                                                     *      

Query   YSQFTEMHAKYAERGLRILAFPSNQFGNQ <---Intron---> EPGNETQIKQFAASYNARFDMFSKIEVNGANAHPLWKWLKDQPNGKGFLGN <--
        |||| |||||||||||||||||||||||| <   324bp    > ||||| |||/|| ||| /|||||||/||||||||||||||/||||/||||| <  
Target  YSQFAEMHAKYAERGLRILAFPSNQFGNQ                EPGNEAQIKKFAESYNVQFDMFSKIDVNGANAHPLWKWLKEQPNGRGFLGN    
        ttctggacgatggagtcacgtctactgac                gcgaggcaaatggttagctgataaaggaggagccttatcagccagagtcga    
        acatcatacaacaggtgttctccaatgaa                acgaacataatcacaatatattgatatagcacactgagtaaacagggttga    
        ctgtgggccgctgatacctccttcgtgcg                gtctatgcggccaccttgtcgctgttgcgcctttgggggaggttgactga     
                                                                                                            

Query   -Intron---> SIKWNFTK <---Intron---> FLINREGQVVKRFGPLDDPSV
         200bp    > |||||||| <   240bp    > ||||||||||||/||/|/|||
Target              SIKWNFTK                FLINREGQVVKRYGPMDNPSV
                    aaatataa                ttaaaggcggaatgcagacag
                    gtagatca                tttagagattagagctaacgt
                   tccggcccg                tgccagtggggacacgctata
                                                                 
 Sequence until next stop: 
AGTACAAACATCCCACTTTGCCTAAATGCAGTACACTTTGTAAAACTGGCCAGTTACAGCATTGTTTACAGAACATTATCCTGCTGTTGTGAATATGTCACAATAAATATGACAAAAACATTAAAGTCAGGAAGTCCTTTTGTATTTAACACTGAATTGATGTTTCATATAAACTAA
 S  T  N  I  P  L  C  L  N  A  V  H  F  V  K  L  A  S  Y  S  I  V  Y  R  T  L  S  C  C  C  E  Y  V  T  I  N  M  T  K  T  L  K  S  G  S  P  F  V  F  N  T  E  L  M  F  H  I  N  * 

 Distance CDS-SECIS: 418 ; UGA-SECIS: 763

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = WARS01000029.1:subseq_18087748,200000_:subseq_0,120000_ Strand = + Positions = 101581 - 101657
 Found by:  Infernal (score=31.97) Covels (score=33.06)
 Stem2 length = 8   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -15.97

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (((((({((.......{[[{(({((((((....................))))))}))}]]}..--....))}))))))
 target  UUGUGCCCCAGACCAGUGACGGCCUGCUCAUAAAUCCGCACAGCGGACAGAGCAGACCUGAUGA--AAAAGGCGUGCAA
                         ****           ^^^                        ****