_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-38
 Query name: gi|908433960|ref|XP_005468008.2| PREDICTED: glutathione peroxidase 3 isoform X2 [Oreochromis niloticus]
 Query range: 22-248  (total 248)

 Target: /data/www-rg/seblastian_results/625762306/tempfiles/temptarget.fasta
 Chromosome: WARS01000014.1:subseq_3242798,200000_:subseq_0,120000_ Strand: -
 Positions:
 -Exon 1  103468       103560
 -Exon 2  101541       101691
 -Exon 3  101318       101435
 -Exon 4  100668       100767
 -Exon 5  99979        100197

 Redox box: no

Query   VGGNDCTMWPVLPLLLLGLLQPCTVGSQFTQ <---Intron---> QCNSSVEGTIYKYRAKTLNGSQTVNFSDYAGKAVLFVNVATYUGLTYQYVE <
        / | |  /||/|||||||||/||| |/ /|| <   1776bp   > /| || /||||||/|||||||/||||||||||/||||||||||| |/|||| <
Target  MSGKDGMVWPLLPLLLLGLLRPCTSGAFYTQ                RCESSTDGTIYKYKAKTLNGSRTVNFSDYAGKSVLFVNVATYUGYTFQYVE  
        atgaggagtcctcccccgccactatggttac                ctgttaggaatatagaacagacagatagtggaagctgaggattgtatctgg  
        tcgaagttgcttcttttgttgcgccgctaca                ggacccagctaaaacactagggctatgaacgagttttatccaggactaat   
        ggggccgggtcagggattggaccccactcag                ttgacatcctcacgagtgcttctgcctccacgtcctccgcacaacccgtg   
                                                                                                 *          

Query   ---Intron---> LNALYEEMKLDGLTILGFPCNQFGKQEPGQRHEILPGLK <---Intron---> HVRPGNGFIPNFLLFEKGDVNGKNEQEVYTF
           105bp    > ||||/||||  |||/|||||||||||||||/||||| || <   550bp    > ||||||||/||||||||||||| /||||/||
Target                LNALHEEMKPLGLTVLGFPCNQFGKQEPGQKHEILPALK                HVRPGNGFVPNFLLFEKGDVNGIDEQEVFTF
                      cagccggaaccgcagcgtctactgacgcgcacgaccgta                cgacgagtgcatcctgagggagaggcggtat
                     atactaaatactgtcttgtcgaatgaaacgaaaattccta                atgcgagttcattttaagatagtaaaattct
                     agtaacgggaacacctcctctcgtgaggtggatatgata                gttaactattaccggcgattgtaacgagtctc
                                                                                                            

Query   LK <---Intron---> SSCPPVGIDFGPMYGRLFWEPLKSTDIKWNFEKFLVGRNGKPVMRWHPTINVSVVRADVRRYLLEQYAKDVFN
        || <   470bp    > /||||||  ||    ||||/||| /|||||||||||| /|||||||||/||/| |||//|//||/ | /|/||
Target  LK                NSCPPVGDSFGNPTDRLFWQPLKISDIKWNFEKFLVGPDGKPVMRWHPSINISEVRAEIRKHLLQLYTQDIFN
        ca                attccgggatgacagacttcccaaagaatatgatcggcggacgaatccaaaatggcggacaccccctacgata
        ta                acgcctgagtgaccagttgactatgatagataatttgcagacttggacgtatcatgcatgaattatacaatta
        tg                ccctatccctcccgcagcggtggccccggctagtggcacggaggggcgtccttacatatcacgcatcagttct
                                                                                                   
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 96 ; UGA-SECIS: 555

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = WARS01000014.1:subseq_3242798,200000_:subseq_0,120000_ Strand = - Positions = 99882 - 99806
 Found by:  Infernal (score=23.11) Covels (score=22.71)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -12.89

         ..(((((((.......(((((((((((((((................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         (((([([((.--....{[[[(((((((({(..................)}))))))))]]]}.....-...))])]))))
 target  GCUGGCAUGU--UGAAUGAAGAGGAGGCUUGAAAACAGGAACUCUGUGGUGCCUCUUUGGAUUCUGG-GGCCAGGACAGC
                         ****           ^^^                        ****