_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-60
 Query name: gi|835868918|ref|XP_012777272.1| PREDICTED: glutathione peroxidase 2 [Maylandia zebra] >gi|923840712|ref|XP_013768723.1| PREDICTED: glutathione peroxidase 2 [Pundamilia nyererei]
 Query range: 1-191  (total 191)

 Target: /data/www-rg/seblastian_results/798024082/tempfiles/temptarget.fasta
 Chromosome: WARS01000017.1:subseq_2614071,200000_:subseq_0,120000_ Strand: -
 Positions:
 -Exon 1  100901       101122
 -Exon 2  99994        100344

 Redox box: no

Query   MTFIAKTFYDLRATTLEGDSVDFNVFRGRVVLIENVASLUGTTTRDFSELNQLQSKYPHRLVVLGFPCNQFGYQ <---Intron---> ENCTNGEILN
        | ||||||||||||||||||||||||||||||||||||||||||||/||||||||||||||||||||||||||| <   556bp    > |||/||||||
Target  MMFIAKTFYDLRATTLEGDSVDFNVFRGRVVLIENVASLUGTTTRDYSELNQLQSKYPHRLVVLGFPCNQFGYQ                ENCSNGEILN
        aatagaattgcagaacgggtggtagtagcggcagaggtctgaaacgtagcacccaatccccggcgtctactgtc                gattaggaca
        ttttcactaatgccctagactatattgggttttaatcctggcccgaagataatagaacagttttgtcgaatgaa                aagcagatta
        ggcccggcccggcggggacggtccgcgaggcgagtgcgcaccccgcccgccgtgcgcctgggcgttctcgtatg                gccctggcgt
                                               *                                                            

Query   SLQHVRPGGGFKPIFTIFEKCDVNGTNTHPVFAYLKDKLPYPDDDPNSLIQDPKFLVWSPISRTDISWNFEKFLIGPEGEPFKRYSKKFPTIDIEPDIQR
        ||||||||||||| ||/|||||||| ||||||||||||||||||||/||/|||||||||||/|||/||||||||||||||||||||||||||||||||||
Target  SLQHVRPGGGFKPSFTVFEKCDVNGANTHPVFAYLKDKLPYPDDDPSSLMQDPKFLVWSPINRTDVSWNFEKFLIGPEGEPFKRYSKKFPTIDIEPDIQR
        tcccgccgggtacatagtgatggaggaaccgtgtcagacctcgggcatcacgcatcgtacaaaaggttatgatcagcgggctaataaatcaagagcgaca
        ctaatgcgggtacgtcttaagatagcacacttcataaatcacaaacgcttaacatttggctagcatcgataatttgcagactagagaatcctatacatag
        cgatgtgccccacctcctggtccccgcatgctctgacgcctcctcccccggccatgcgcaccggccggctggtctaaaagctaaccagccctccgtctaa
                                                                                                            

Query   LLRLTKT
        |||||||
Target  LLRLTKT
        ctataaa
        ttgtcac
        gaaacgc
               
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 71 ; UGA-SECIS: 524

------- SECIS element -- id:1 -- grade:B ----
 Chromosome = WARS01000017.1:subseq_2614071,200000_:subseq_0,120000_ Strand = - Positions = 99922 - 99844
 Found by:  Infernal (score=20.96) Covels (score=14.28)
 Stem2 length = 11   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -18.65

         ..(((((((.........((((((((((.(((((...............))))).))))))))))............)))))))..
 model   uucggucaugcg--UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuu---u-uuucaugaccggc
         (((((((((.........([[((((((((((((......-..-----...))))))))))))]])........-...)))))))))
 target  CUUUUAAGCCUUAUUAAAUGAGGGUGAUAUUCUGAAAAG-CU-----GAGGGAAUAUUAUCUGAGGCCUUAUA-AGCGCUUAAGAG
                           ****            ^^^                        ****