_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-65
 Query name: gi|428160947|gb|AFY97790.1| glutathione peroxidase 1a [Sparus aurata]
 Query range: 1-191  (total 191)

 Target: /data/www-rg/seblastian_results/371408682/tempfiles/temptarget.fasta
 Chromosome: WARS01000013.1:subseq_7379077,200000_:subseq_0,120000_ Strand: -
 Positions:
 -Exon 1  100949       101173
 -Exon 2  100000       100347

 Redox box: no

Query   MAGNVKRFYALTANLLSGEMFSFSALKGKVVLIENVASLUGTTTRDYTQMNELHSRYSDKGLVILGVPCNQFGHQ <---Intron---> ENCKNDEIL
        |||/||||| ||| |||||  |||||||||||||||||||||||||||||||||/||| /||||||||||||||| <   601bp    > || ||||||
Target  MAGSVKRFYDLTAKLLSGETLSFSALKGKVVLIENVASLUGTTTRDYTQMNELHTRYSAEGLVILGVPCNQFGHQ                ENSKNDEIL
        aggagaattgcagacctggatattgcagaggcagaggtctgaaaagtacaagccacttgggcgatggctactgcc                gataaggat
        tcggtagtaatccattcgactgtcctagattttaatcctggcccgaacataatacgaccagttttgtcgaatgaa                aacaaaatt
        gtgcgagtcctaaggggaacgtctagggattctgtcgttaaaacgcctggcgccgtcccgacttgtgcctgtatg                gccgttaca
                                               *                                                            

Query   QSLKYVRPGNGFEPKIQLLEKVDVNGKDAHPLFVYLKEKLPFPSDDAMALMTDPKSIIWSPVRRDDVSWNFEKFLVGPDGEPYKRYSRCFLTIDIEADIK
        /||||||||/||||| ||||||||||||||||| /||||||/|||| |||||||| ||||||||/|/||||||||||||||||||||| |||/|||||||
Target  KSLKYVRPGDGFEPKFQLLEKVDVNGKDAHPLFDFLKEKLPYPSDDTMALMTDPKFIIWSPVRRNDISWNFEKFLVGPDGEPYKRYSRNFLTVDIEADIK
        atcatgccgggtgcatcccgagggagaggccttgtcagacctcaggaagcaagcataatacgaaagattatgatcggcgggctactaaatcaggagggaa
        actaatgcgagtacatattaatatagaacacttattaaatcacgaactcttcacatttggctggaatcgataatttgcagacaagaggattctatacata
        gtggtctagtctaagcgtggggtgtaatccagtctcgaataccctccgtcgttagcctgtccggccccgctggcgttttcgccgcccatccatctgatta
                                                                                                            

Query   ELLKKVK
        ||/|/||
Target  ELIKRVK
        gcaaaga
        attagta
        gataacg
               
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 183 ; UGA-SECIS: 636

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = WARS01000013.1:subseq_7379077,200000_:subseq_0,120000_ Strand = - Positions = 99816 - 99746
 Found by:  Infernal (score=33.4) Covels (score=23.23)
 Stem2 length = 9   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -11.66

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..([(((((---....{[[((((({(((((......--.........)))))})))))]]}..--....)))))])..
 target  CCUGUUUAC---UUAAUGAAGAGAGUCCUUGAAACC--UAUCUGUGAGGGGAGUUUCUGAUGA--AGUUGUAAAAGAC
                         ****           ^^^                       ****