_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:2     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-41
 Query name: gi|908510372|ref|XP_013131026.1| PREDICTED: redox-regulatory protein FAM213A-like isoform X3 [Oreochromis niloticus]
 Query range: 1-212  (total 212)

 Target: /data/www-rg/seblastian_results/510258899/tempfiles/temptarget.fasta
 Chromosome: WARS01000009.1:subseq_8855515,200000_:subseq_0,120000_ Strand: -
 Positions:
 -Exon 1  95706        95850
 -Exon 2  95150        95241
 -Exon 3  94921        95061
 -Exon 4  93972        94136
 -Exon 5  93801        93893

 Redox box: YES

Query   MGMWALGLGAVGAALTGIFLANTDLCLTKAANATLQYLEEADLHSTMGD <---Intron---> DKVIKAKSLWEMNGAVVMAVRRPGUFLCRE <---
        ||||/|||||||||| |||||||||||/|||||/|/|||/||| ||/ | <   464bp    >  ||||||/||| ||||/||||||||||||| <   
Target  MGMWSLGLGAVGAALAGIFLANTDLCLSKAANASLEYLEDADLRSTIDD                GKVIKAKTLWERNGAVIMAVRRPGUFLCRE     
        agatttgcggggggcggatcgaagctctaggagtcgtcggggtctaagg                gagaagaactgaagggaaggcccgttttag     
        tgtgctgtgctgcctcgtttcacatgtcaccacctaataacatgccta                agattacactgagagctttctggcggttgga     
        ggggggttcatattatgccgccatgtgtatccaaggttattcgcccat                tagccgagcgggacgtgcgtaagtaatgcag     
                                                                                                 *          

Query   Intron---> EASALSSLKPQLEELGVPLVAVVKEDIGTEIRDFRPHFAGDIYIDEQ <---Intron---> KRFYGPVQRRMGGLGFIRLGVWQNFM
         88bp    > ||| ||||||||||| |||||||||//||||/||||||||||||||/ <   784bp    > | ||||/||/|||||||||||||||/
Target             EASELSSLKPQLEELRVPLVAVVKENVGTEIQDFRPHFAGDIYIDEE                KCFYGPLQRKMGGLGFIRLGVWQNFI
                   ggtgcttcacccggcagccggggagaggagacgtacctgggataggg                atttgcccaaaggcgtaccggtcata
                   accatcctacataatgtcttcttaaatgcataatgcatcgatataaa                agtagctagatggtgttgtgtgaatt
                   gctggctggcgaagcgctgctggggcccagcgccagcctgttcatag                accccggggggttggctctagggtca
                                                                                                            

Query   RAWRSGYQGNMNGEGFVLGGVFVIGPADQ <---Intron---> GILLEHREKEFGDKVDTADVLEAVKKIVPVK
        ||||||||||||||||/||||||||  || <    78bp    > ||/|||||||||/||/||||||||/|||| |
Target  RAWRSGYQGNMNGEGFILGGVFVIGAGDQ                GIILEHREKEFGNKVETADVLEAVRKIVPAK
        cgtatgtcgaaagggtacgggtgaggggc                gaacgccgagtgaaggagggtgggaaagcga
        gcggcgaagatagagtttggttttgcgaa                gtttaagaaatgaataccattactgattcca
        tcggttcaccgccgcccgtagtcccaacg                gtcggttgggcctgggtattagtcgatgaga
                                                                                    
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 530 ; UGA-SECIS: 944

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = WARS01000009.1:subseq_8855515,200000_:subseq_0,120000_ Strand = - Positions = 93270 - 93193
 Found by:  Infernal (score=32.49) Covels (score=27.42)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 1, 0
 Free Energy = -24.39

         ..(((((((.......((((((((((.(((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         (((((((((((.....{[[(((((((.((((......-..........)))))))))))]]}.....-.)))))))))))
 target  UCUGUGUGUGUGAUAAUGAAAACUUGACUCUAAAUUC-AUUACUGAGAGGAGCAGGUUUGAUGCACA-AACACAUACAGG
                         ****           ^^^                        ****