_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-40
 Query name: gi|1007706936|ref|XP_015808232.1| PREDICTED: selenoprotein T2-like isoform X2 [Nothobranchius furzeri]
 Query range: 1-173  (total 203)

 Target: /data/www-rg/seblastian_results/282169401/tempfiles/temptarget.fasta
 Chromosome: WARS01002953.1:subseq_37833,136571_:subseq_0,120000_ Strand: -
 Positions:
 -Exon 1  100950       101060
 -Exon 2  100846       100925
 -Exon 3  100268       100378
 -Exon 4  100003       100129
 -Exon 5  99831        99920

 Redox box: YES

Query   MAEFGPGGLSAVLLLFMALTLRDIYIGRSEQRPGLSP <---Intron---> ETETDSDPGKTVKAALYSGPVLQFRYC <---Intron---> ISUG
        |||/   || | | || |||/||/|/|||  / |  | <    24bp    > /|  |// ||  | /||/||||/|/|| <   467bp    > ||||
Target  MAEYSQAGLLAALFLFTALTVRDVYLGRSSSQRGYQP                DTLQDTESGKPAKPSLYTGPVLKFQYC                ISUG
        aggtacggccggctctagcagcggtcgatatccgtcc                gaccgagtgacgactctagcgcatctt                attg
        tcaagacgttccttttcctctgatatggcgcaggaac                actaacacgaccacctacgcttataag                tcgg
        gggccggccggtacctgtctcgcttctagctgcacgg                tcggcagccaccaccgctgcacgcgc                tccac
                                                                                                          * 

Query   YSKVFQEYSNAISQVYPDIRIQGENHPPTPINR <---Intron---> CFAQLISYLKLLSILLIISGQNPFSLLSLDTPSAWTWSQNNK <---Intr
        ||||||||| ||||/||||||/|||/|||| || <   138bp    > | / ||||||| |||||/|||||| || |||| ||||||/|| <    82b
Target  YSKVFQEYSRAISQLYPDIRIEGENYPPTPFNR                CISNLISYLKLFSILLIVSGQNPFILLGLDTPRAWTWSQDNK         
        taagtcgttcgaacctcgacagggatccactaa                taaacattcacttaccagagcactaccgcgacagtatacgaa         
        agattaaacgctgatacatgtagaaacccctag                gtgattcatattctttttggaacttttgtaccgcgcggaaaa         
        ctagcggctctccggcgccctgaaccgtcccc                gtctcgcccggtcccacccttgcctcctctcacacgcgcatcg         
                                                                                                            

Query   on---> IFSCLMAFFICNMMETHFLSTGAFEVTLNG
        p    > |||||||||/||||||||||||||||||||
Target         IFSCLMAFFLCNMMETHFLSTGAFEVTLNG
               atttcagttctaaagactttaggtggacag
               ttcgttctttgattacattccgctatctag
               acccggcccctcgggtccgcaaacgctgtt
                                             
 Sequence until next stop: 
GAGTTATGA
 E  L  * 

 Distance CDS-SECIS: 544 ; UGA-SECIS: 862

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = WARS01002953.1:subseq_37833,136571_:subseq_0,120000_ Strand = - Positions = 99286 - 99215
 Found by:  Infernal (score=36.23) Covels (score=34.44)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -17.94

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({(((((---....{[[[(((({((((((.....-.........))))))}))))]]]}..--....)))))})..
 target  CGUCUGGCA---UUCAUGAAGGUUCGGUCUUAAAGC-AGAUUCUGCGAGGCCCAACCGGAUGU--CCCCUGCCACGAA
                         ****           ^^^                       ****