_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-12
 Query name: gi|168823481|ref|NP_001038799.2| selenoprotein S [Danio rerio] >gi|172046070|sp|Q0VFV6.2|SELS_DANRE RecName: Full=Selenoprotein S; Short=SelS; AltName: Full=VCP-interacting membrane protein
 Query range: 10-190  (total 190)

 Target: /data/www-rg/seblastian_results/664012096/tempfiles/temptarget.fasta
 Chromosome: WARS01000067.1:subseq_2235835,200000_:subseq_0,120000_ Strand: +
 Positions:
 -Exon 1  98510        98564
 -Exon 2  99335        99466
 -Exon 3  99998        100107
 -Exon 4  100199       100288
 -Exon 5  100601       100673
 -Exon 6  101406       101488

 Redox box: no

Query   RNEDVPPQNQDLSFLQPSV <---Intron---> TAFMSEYGWYLLFGCVGVYLLIQHLRKSRSSTQTRSSSGSAEAH <---Intron---> DVGSV
        |    | /|||||       <   770bp    >    /|/|||||/ | | ||||/|/| | |||  /|||        <   531bp    > |  /|
Target  RTHKAPLKNQDLSSFSVIA                GDLLSQYGWYLVIGTVLVYLLVQYLSKRRSSQSSRSSPPGTSEE                DAVTV
        cacagccaacgcattagag                ggcctctgtttgagagcgtccgctcaaaatacatcatccgatgg                gggag
        gcaacctaaaatgctgtt                cgattcaaggatttgctttatttaatgaggcgagcggcccgcca                aactct
        cacgtgtgcgcgccccct                aattgcgtggcgatgtggccgccgcccgaaccgccccatgtaaa                attgag
                                                                                                            

Query   VRRQEALEASRRRMQEEQDARAAEFREKQRM <---Intron---> LEEEKRRQKIEMWDSMQEGKSYKGSAKVAQ <---Intron---> QNTEEAA
         |/|||/||/||/|||| ||/|| /|||||  <    91bp    >  ||||||||||||/||| |||/||/|| /| <   312bp    > | /||| 
Target  ARKQEAMEAARRKMQEELDAKAAIYREKQRQ                QEEEKRRQKIEMWESMQLGKSFKGAAKPSQ                QTSEEAG
        gcacggagggcaaacggcggaggatagacac                cgggaaacaagatgaaccgaatagggactc                catgggg
        cgaaactaccggataaatacacctagaaaga                aaaaaggaatatgagtatgagtagccacca                accaacg
        agaagcgaatgaggaggcccaacccagagag                aaggggggaaggggcgggagccgatgagtg                gatagcc
                                                                                                            

Query   SSSSLRPKTEKKPLRSSG <---Intron---> YSPLSGDAGGSCSWRPGRRGPSAGGUG
        ||//|/|||//|||||/  <   732bp    > |/||||  ||||||||||||||/||||
Target  SSTALKPKTDRKPLRSAD                YNPLSGQGGGSCSWRPGRRGPSSGGUG
        ttagcacaagaacccagg                taccagcgggttttacgaagcttggtg
        cccctacacagactggc                aaactggagggcgcggcggggcccgggg
        agaggaaggcggatcca                cctcgcggagccccgatcgaggattaat
                                                                   * 
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 300 ; UGA-SECIS: 303

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = WARS01000067.1:subseq_2235835,200000_:subseq_0,120000_ Strand = + Positions = 101789 - 101867
 Found by:  Infernal (score=26.15) Covels (score=27.26)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -13.95

         ..(((((((.......(((((((((((((((................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         (((((([{(.......{[[((((({{(((((................)))))}})))))]]}.....-...)}]))))))
 target  CAUUGAAAGCUUGUCAUGAAGCCAUUUCUGUAAACGGUGAUAAACCAGUAGAUUUGGCUGAUGAAAU-UCACAGUCAGUG
                         ****           ^^^                        ****