_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-71
 Query name: gi|428160949|gb|AFY97791.1| glutathione peroxidase 1b [Sparus aurata]
 Query range: 4-187  (total 187)

 Target: /data/www-rg/seblastian_results/570448668/tempfiles/temptarget.fasta
 Chromosome: WARS01000013.1:subseq_9640521,200000_:subseq_0,120000_ Strand: +
 Positions:
 -Exon 1  98557        98760
 -Exon 2  100003       100350

 Redox box: no

Query   FYDLTAKLLTGETFKFSSLQGKVVLIENVASLUGTTTRDYTQMNELHERYAGKGLVILGVPCNQFGHQ <---Intron---> ENCKNDEILMSLKYIR
        |||| | ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| <   1242bp   > |||||/|||/||||||
Target  FYDLAATLLTGETFNFSSLQGKVVLIENVASLUGTTTRDYTQMNELHERYASKGLVILGVPCNQFGHQ                ENCKNEEILVSLKYIR
        ttgcggactaggatatttccgaggcagaggtctgaaaagtacaagccgctgaagcgacggctactgcc                gataaggacgtcatac
        taatcccttcgactatcctagattttaatcctggcccgaacataataagacgagttttgtcgaatgaa                aagaaaatttctaatg
        tctctcagagaaattctgtgcatcctgtggtcatgccgtccggtgccgtcccggctcgagcccgcctg                gccgcaaccgtcgcct
                                        *                                                                   

Query   PGNGFEPKFQLLEKVDVNGKDAHPMFVFLREKLPFPSDEPSALMTDPKLIIWSPVCRNDVAWNFEKFLIGPDGVPFKRYSRRFLTSDIEGDIKKLLEKAN
        |||||||||||||||/||||||||/||||/||||||||||/ |||||||||||||||||||||||||||||||||||||||||||||||||||||| /||
Target  PGNGFEPKFQLLEKVEVNGKDAHPLFVFLKEKLPFPSDEPTTLMTDPKLIIWSPVCRNDVAWNFEKFLIGPDGVPFKRYSRRFLTSDIEGDIKKLLNQAN
        cgagtgcatcccgagggagaggccctgtcagacctcaggcaacaagcataatacgtaagggtatgatcagcgggctactaaatcaagagggaaaccacga
        cgagtacatattaatatagaacactttttaaatctcgaacccttcacatttggctggaatcgataatttgcagtctagagggttcgatagataattaaca
        tatctgagtgcggggggcggtctcttgcggagctcgttggcccgtccgaccgcggcgtcgcgctggcccgacaaccgtccggccccctgcccggcccgac
                                                                                                            
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 152 ; UGA-SECIS: 605

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = WARS01000013.1:subseq_9640521,200000_:subseq_0,120000_ Strand = + Positions = 100503 - 100576
 Found by:  Infernal (score=37.24) Covels (score=26.05)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -19.71

         ..(((((((.......(((((((((((((((.................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((((((---....{[[((({(((((((...................)))))))})))]]}..--..-.)))))))).
 target  UUCUUUUAC---UAUAUGAGGGCACCCUCUGAAACCAAACUAGCUGUGAGGGGGGUAUCUGAUGA--GA-UGUAAAAGGC
                         ****           ^^^                         ****