_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-26
 Query name: gi|1035264111|ref|XP_016897738.1| PREDICTED: selenoprotein Pb-like isoform X2 [Cynoglossus semilaevis]
 Query range: 1-187  (total 248)

 Target: /data/www-rg/seblastian_results/678108260/tempfiles/temptarget.fasta
 Chromosome: WARS01000030.1:subseq_2327944,200000_:subseq_0,120000_ Strand: -
 Positions:
 -Exon 1  101219       101445
 -Exon 2  100007       100219
 -Exon 3  99514        99634

 Redox box: YES

Query   MRCVSFLWLCAAIPGVVFSAHTTLLVEGDRNVSRICKPAPHWEIQGQAPMKELLGNVVVVALLKATUHFCLTQAYK <---Intron---> IGGLRDKL
        |  /  |||  |/||/////| /|/|||| / |||||||| |/|/|||||/||||||||||||||/| ||||||/  <   999bp    > ||||| ||
Target  MHSLLSLWLYVALPGLLWASHVSLIVEGDNDASRICKPAPSWKIKGQAPMQELLGNVVVVALLKASUQFCLTQAFN                IGGLRSKL
        actcttctctggccgcctgtcgacaggggaggtaatacgcttaaagcgcacgccgagggggccagatcttcacgta                aggccaac
        tacttctgtatctcgttgccatgtttagaaaccgtgaccccgatagacctaattgattttcttacggatgtcacta                tggtggat
        gttcggaggtgcgatgggcacgtgagggcccccgccatcccgaagaaacgagggttgtgggagaccagctccgcc                ctacgtcgg
                                                                          *                                 

Query   NRSNLTGVSFMIVNEQEAESRAMYWELKRRAPPDVPVYQQGPFQDDVWETLDGDKDDFLVYDR <---Intron---> CGLLTFHIVLPYSFLQYPYVE
        |||||| ||||||||/||/|||||||||||||| |||||| |||/|||| |||||||||/||| <   372bp    > ||||||||||||||| |||||
Target  NRSNLTEVSFMIVNEREAQSRAMYWELKRRAPPGVPVYQQDPFQNDVWEALDGDKDDFLIYDR                CGLLTFHIVLPYSFLHYPYVE
        acaacaggttaagagcggctagattgcaaagccggcgtccgctcaggtggcgggaggtcatga                tgccatcagcctatcctctgg
        aggatcatcttttaagacacgctagataggcccgtctaaaactaaatgactagaaaatttaag                ggttctatttcagttaacata
        ccccggggccgaatgagtgcaagcggggaagcctttgcggcctgttgggtgttcatccgctc                gtcgccttagatctcgttctag
                                                                                                            

Query   AAVRATYLKNICNCSPLNN
        ||/|||| ||||||/  |/
Target  AAIRATYYKNICNCTVSNH
        ggaagattaaatatagaac
        cctgccaaaatgagctgaa
        tacactttacccccagttc
                           
 Sequence until next stop: 
AGAACACATACGCACACACAAACGCTTGCACATGAATAG
 R  T  H  T  H  T  Q  T  L  A  H  E  * 

 Distance CDS-SECIS: 952 ; UGA-SECIS: 1312

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = WARS01000030.1:subseq_2327944,200000_:subseq_0,120000_ Strand = - Positions = 98561 - 98487
 Found by:  Infernal (score=25.17) Covels (score=25.52)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -8.49

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({((({(.......{[[[((((((((({(................)})))))))))]]]}..--.--.)})))})..
 target  UGUCUCCCCCCAUUAAUGAAGUCUAUGGUGUGAAACCUGCCUGCAGGGGGCUGUAGAUGGAUGU--G--UGUGGAAAGA
                         ****            ^^^                       ****