_________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 3e-53 Query name: gi|835870126|ref|XP_004540525.2| PREDICTED: selenoprotein N [Maylandia zebra] Query range: 1-557 (total 557) Target: /data/www-rg/seblastian_results/90913682/tempfiles/temptarget.fasta Chromosome: WARS01000017.1:subseq_6749615,200000_:subseq_0,120000_ Strand: - Positions: -Exon 1 101763 101951 -Exon 2 100824 100941 -Exon 3 100554 100684 -Exon 4 100003 100215 -Exon 5 99789 99913 -Exon 6 98933 99070 -Exon 7 98751 98832 -Exon 8 97961 98149 -Exon 9 97771 97876 -Exon 10 97134 97246 -Exon 11 96938 97039 -Exon 12 96626 96790 Redox box: no Query MAADVDKRIPEEEKKIAPQNGKQSPGSRSWIYRGMWTWVVVCAVPLFAFGIKYYQDAQLLKRH <---Intron---> EESVRTLGAEGLFLFSSLDTD ||||||| |||// |/|||| /|||| ||| /|/||///| |||||||||| |||||||||| < 821bp > ||||||||||||||||||||| Target MAADVDKTIPEDQSDISPQNGHRSPGSGSWISKGLWTFLLVGAVPLFAFGIKSYQDAQLLKRH EESVRTLGAEGLFLFSSLDTD agggggaaacggcagatccagccacgtgttatagctatccggggcctgtgaattcggcccacc ggagcacggggctcttttgag tccataactcaaagatccaagaggcgcgcgtcagtgcttttgctcttctgtacaaacattaga aagtgctgcagttttcctaca gcacgtaaccgtgcttgtgtatgcgctacgcgggggtcgactccttcctgcgacatagccatt aattatgtcggttccccacgc Query HDFYLSPEEFKPIAEKLTG <---Intron---> ITNPADFEEEAIHDPNGETLTLEAKMQPLLLDSMTKSKDGFLG <---Intron---> VSHSSL || |||||||||||||||| < 139bp > || | ||||| ||||||||||||||||||||||||||||||| < 338bp > |||||| Target HDLYLSPEEFKPIAEKLTG ITPPVDFEEEVTHDPNGETLTLEAKMQPLLLDSMTKSKDGFLG VSHSSL cgctcacggtacaggacag aaccggtggggacgcaggatatggaacccccgtaaaaaggtcg gtcatc aatatgcaatactcaatc gtccctataaatcaacagactctacatactttactcagaagttg tcagct tcttccgggtagttgaca atacaactggagctcctagtatggtaggtgggccgaacgtaccg gtcctg Query SGLRSWKSPAVPSSSFSASQFRVFLPPKNKIEVGDTWWVIPSELNIFTGYLPNNRYHPPTPRGRE <---Intron---> VLIHSLLSMFHPRPFIKTR ||||||||||/||||||||||| |||||||/|||||||||||||||||||||||||||| |/|/| < 89bp > ||||||||||| |||||/| Target SGLRSWKSPAIPSSSFSASQFRAFLPPKNKVEVGDTWWVIPSELNIFTGYLPNNRYHPPAPKGKE VLIHSLLSMFHSRPFIKSR tgccttaacgactttttgactagttccaaagggggattgacagcaatagtccaactcccgcagag gcactttaatctcctaatc cgtgcgagcctcccctccgatgcttccaaatatgacggttcgatattcgatcaagaaccccagaa tttacttgttacgcttacg tggccggcaaatctcccccgcgccgcagcgcggacagggtttgcccctgcgcccccctcgagcag tccccggcgtcgacccaat Query FAPQGAVACIRASNDFYYDIIFR <---Intron---> IHAEFQLNDIPDFPFWFTPGQFTGNIVLSKDASHVRLFHLYVPNNR <---Intron---> ||||| ||||||||||||||/|| < 718bp > |||||||||/|/||||||||||||||/||||||||| |||||||/| < 100bp > Target FAPQGTVACIRASNDFYYDIVFR IHAEFQLNDVPNFPFWFTPGQFTGNIILSKDASHVRHFHLYVPNDR tgccgaggtacgaagtttgagta acggtccaggcatctttacgctagaaactaggtcgcctcctgcaga tccagctcgtgcgaataaatttg tacatataatcatctgtccgatcgatttcaaccatgatatatcaag tttgcacccctcctctctcccc gttaacgcctcactccgccgggccccctgcatctcccccccccctc Query SLNVDMEWLYGASESSNMEVDIGYLPQ <---Intron---> LELQSAGPSTPSVITDEQGNIIDRRDSSNEPIQFVFEEIHWTSEISQEEAARHVEV ||||||||||||||||||||||||||| < 601bp > ||||| |||||||| ||/||/|| || | ||||||||/||||||/|//|||| //| Target SLNVDMEWLYGASESSNMEVDIGYLPQ LELQSTGPSTPSVIMDEEGNVIDSRDGSGEPIQFVFEDIHWTSELSRQEAARRLDV tcaggagtctggagaaaagggagtccc tgcctagctactgaaggggagagacggaggcactgtggactatgcaccgggcctgg ctatatagtagcgaggatatatgatca tataccgccccctttaaagattaggagggactatttaatagccatggaaccggtat gtgtgcgaggtcctgcccgggccacggg agggcgacctgcccgcggctccctatctcgccgttcgctcgcagccggactgcgcc Query TFYPFKK <---Intron---> VSYLPFSEAFDRAQAEKKLVHSILLWGALDDQSCUG <---Intron---> SGRTLRETVLESSPVLALLNQSFIS ||||||/ < 84bp > ||||||||||/||/|| ||||||||||||||||||| < 524bp > ||||||||||||||||||||||||| Target TFYPFKR VSYLPFSEAFERAEAENKLVHSILLWGALDDQSCUG SGRTLRETVLESSPVLALLNQSFIS attctaa gttccttggtgcggggaacgctacctggtggctttg tgcaccgagcgatcgtgccacataa ctactag tcatctcactagcacaaattactttggctaaacgg gcggctgacttagccttcttaagttg cccccgg gctgctagccgataaacaggtctgtgcaaccgcca tggatcggacgatgccgagccgcctc * Query SWSLVKELENLQ <---Intron---> ADEQNSALSEKARLHLEKYSFPVEMMVALPNGTI <---Intron---> VHHINANFFLDQTAMKPEEEEA ||||||||||/| < 94bp > |||||||||||||||||||/|||||||||||||| < 147bp > |||||||||||||||||||| | Target SWSLVKELENMQ ADEQNSALSEKARLHLEKYTFPVEMMVALPNGTI VHHINANFFLDQTAMKPEEEGA attcgagcgaac gggcaagtagagctccgatatcggaaggccagaa gccaagattcgcagaacggggg ggcttaataata caaaagctgaacgtataaactctatttctcagct taatacatttaacctacaaagc cgtttagggcgg ttagctggtaacaacgggccctgggggccctatt cccctccccgcggcgggggaaa Query TFSFSGGFEDPSTSTYISFLKEGLEKAKEYLAQ |||||||||||||||||||||||||||||||| Target AFSFSGGFEDPSTSTYISFLKEGLEKAKEYLAQ gtattggtggctatataatcaggtgagagtcgc ctgtcggtaacccccatgttaagtaacaaatca tccctggtgcccacttcccggggggacggcgag Sequence until next stop: TAA * Distance CDS-SECIS: 518 ; UGA-SECIS: 899 ------- SECIS element -- id:1 -- grade:A ---- Chromosome = WARS01000017.1:subseq_6749615,200000_:subseq_0,120000_ Strand = - Positions = 96107 - 96034 Found by: Infernal (score=42.03) Covels (score=33.34) Stem2 length = 10 Apical loop length = 16 Insertion in stem2 = 0, 0 Free Energy = -29.09 ..(((((((.......(((((((((((((((................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ((((((((((--(...{[[(((({(((((((................)))))))}))))]]}..--.)-)))))))))) target GUUUCAGCAG--UUUGUGAAGACUUUGCCCGAAAGCUCUCUCUGGGCUGGGCGACGUCUGAUGU--UA-UUGCUGAGGC **** ^^^ ****