_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-35
 Query name: gi|908503296|ref|XP_013130818.1| PREDICTED: selenoprotein M-like [Oreochromis niloticus] >gi|908503300|ref|XP_013130819.1| PREDICTED: selenoprotein M-like [Oreochromis niloticus] >gi|908503304|ref|XP_013130820.1| PREDICTED: selenoprotein M-like [Oreochromis niloticus] >gi|908503308|ref|XP_013130821.1| PREDICTED: selenoprotein M-like [Oreochromis niloticus]
 Query range: 1-158  (total 158)

 Target: /data/www-rg/seblastian_results/307105247/tempfiles/temptarget.fasta
 Chromosome: WARS01000015.1:subseq_4064591,200000_:subseq_0,120000_ Strand: +
 Positions:
 -Exon 1  97821        97916
 -Exon 2  98681        98716
 -Exon 3  98906        98940
 -Exon 4  99061        99139
 -Exon 5  100000       100227

 Redox box: YES

Query   MWLIVLASLFHCASAYDVDLKKLEGLARARVE <---Intron---> TCGGUQLNRLRE <---Intron---> VKAFVVQDIPLY <---Intron-
        ||||||||| |||||||||||||/|||/|||| <   764bp    > |||||||||||| <   189bp    > |||||||||||| <   120bp  
Target  MWLIVLASLLHCASAYDVDLKKLDGLAKARVE                TCGGUQLNRLRE                VKAFVVQDIPLY            
        atcagcgatcctgtgtgggcaacggcgagagg                atggtccaacag                gagtggcgacct            
        tgttttcgttagcccaatataatagtcacgta                cggggatagtga                tactttaatcta            
        gggcggctatccagcctgtggagtgcaagggg                attaaggcgcag                cgctgcgcttt             
                                                            *                                               

Query   --> HNLVMKHIPGADPELVLLNHYYEELD <---Intron---> RVALSDMTRSEINELLGKLGFYKKAQAEDEVPEEFRFSPAKDSPFKNEPAHQPS
          > |||||||||||||||||||||/|||| <   860bp    > |/|||||||||||||||||||||||| |||||||||||||||||||/|||// |
Target      HNLVMKHIPGADPELVLLNHYFEELD                RIALSDMTRSEINELLGKLGFYKKAQPEDEVPEEFRFSPAKDSPFKDEPAYKSS
            cacgaacacgggcgcgccacttggcg                cagctgaactgaagccgacgttaagccggggcggtcttcgagactaggcgtatt
            aatttaatcgcacattttaaataata                gtctcatcgcataattgatgtaaacacaaatcaatgtcccaagctaaaccaacc
           ctcggggtttgcttgtccgcttcaggt                gccgtcgcctgctggggagcccggtaggcggaggcccctcaccctatgagtgcc
                                                                                                            

Query   SSSIATESASSEPSAEVKHTDL
        /|//|||/ |||| || |||||
Target  TSTLATENVSSEPKAEDKHTDL
        atacgagagttgcagggacagc
        ccctccaatccacacaaaacat
        tcatcagtccagcaaacgttca
                              
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 406 ; UGA-SECIS: 769

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = WARS01000015.1:subseq_4064591,200000_:subseq_0,120000_ Strand = + Positions = 100634 - 100715
 Found by:  Infernal (score=32.64) Covels (score=29.15)
 Stem2 length = 11   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -22.72

         ..(((((((..........(((((((((((((((...............)))))))))))))))............)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         .((((((((..........{[[((((((((((((.....--........))))))))))))]]}........-...)))))))).
 target  UACCUACUGUGAAACUGAAUGAAGCCUCAGGCUGAAAAC--UGUCUGUCUGGCUUGAGGUUGAUGCUCCAUG-UUCUGGUGGGUU
                            ****           ^^^                       ****