_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-12
 Query name: gi|930754941|ref|XP_014194076.1| PREDICTED: selenoprotein K isoform X1 [Haplochromis burtoni] >gi|930754943|ref|XP_005937901.2| PREDICTED: selenoprotein K isoform X2 [Haplochromis burtoni]
 Query range: 1-94  (total 94)

 Target: /data/www-rg/seblastian_results/291739985/tempfiles/temptarget.fasta
 Chromosome: WARS01000026.1:subseq_701038,200000_:subseq_0,120000_ Strand: +
 Positions:
 -Exon 1  99409        99427
 -Exon 2  100004       100094
 -Exon 3  100468       100542
 -Exon 4  101020       101116

 Redox box: no

Query   MVYVSNG <---Intron---> QVLDSRAQSPWRLSLLVDLFWGAVEFIGLF <---Intron---> FKTMFHPDMSKNGNSVSSRFTDGRG <---I
        ||||||| <   576bp    > |||||| |||||||||||||| |||||||/ <   373bp    > |||/  |/|/|/||  ||||||||| <   4
Target  MVYVSNG                QVLDSRTQSPWRLSLLVDLFWRAVEFIGLY                FKTLVDPNMTKDGNCGSSRFTDGRG      
        agtgtag                cgcgaaactctccttcggcttagggtagct                taatggcaaaaggatgttctaggag      
        ttatca                gattaggcaccggtctttattggctattgta                tacttacatcaagaggccgtcaggg      
        ggcgcc                tgcgccgtgaagaacagctccgaaggtccg                ttgagtttcgggtacttaaccttca       
                                                                                                            

Query   ntron---> PPGPPGGRRRMGRINHGAGPSPPPMGGGGUGR
        77bp    > |||||||||||||| || ||/ ||||||||||
Target            PPGPPGGRRRMGRITHGGGPNAPPMGGGGUGR
                  ccgccggaaaagaaacgggcagccaggggtga
                  ccgccgggggtggtcagggcaccctggggggg
                 ttgtcttcaaggaaacttattctaagtaaaaag
                                               *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 341 ; UGA-SECIS: 347

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = WARS01000026.1:subseq_701038,200000_:subseq_0,120000_ Strand = + Positions = 101458 - 101538
 Found by:  Infernal (score=20.71) Covels (score=21.09)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -8.4

         ..(((((((.......(((((((((((((((.................)))))))))))))))............)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         ...({({((.--....{[[(((({((((((...................))))))}))))]]}........-...))})})...
 target  CACAAGCAGU--UUUUUGAAGCUUUUCUGGGAAUUCCUAAACGUAGGGGCCAGAAUGGCUGAUGCAGCAGC-CAUCUCCAUCAU
                         ****           ^^                          ****